Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0730 ATGGACCCGGCAGCTGTTTCACCGATGCTAAATAAACGCGATCGCGAGATATCAATCAACGATAACCCCGGCACAGGAGACGATGAAGAAGAGAAAGACAACGAAGGCGAGCCCACGGAGGGTGCAGTAGAAGTCGGCACTCGTAGACCAAGAGGTCGCCCGCCTGGATCCAAAAACAAGCCCAAACCCCCTATTTTCGTCACGCGCGACAGCCCGAACGCCCTTCGGAGCCACGTGATGGAGGTGGCCGGCGGCCACGACGTTGCCGAAAGCGTCGCCCAGTTCGCCCGTAGACGTCAACGAGGGGTCTGCGTCCTCAGCGGCAGCGGCTCCGTAGCCAACGTGACTCTGAGACAGCCCGCCGCGCCTGGCGCCGTGGTGGCACTCCATGGAAGATTCGAGATTCTGTCCCTAACAGGAGCATTCCTCCCCGGACCTGCCCCTCCTGGCTCCACTGGACTCACCGTGTACCTCGCCGGAGGTCAGGGCCAGGTTGTGGGAGGAAGTGTGGTTGGATCACTGGTAGCGGCAGGCCCGGTGATAGTGATAGCCGCCACTTTTGCGAACGCAACATACGAGAGACTGCCTCTGGAAGAAGAAGAAGAAGGTGGGCAGGCGCCGCCGCCGAGTGGTTCGCCGCCTGCAATTGGAAGCAGTGGTGGACAGCATCACTCTGGCCTGCCGGAGCTGCCCATATACAATCTGCCACCGAATCTACTCCCTAACGGCGGCCAATTGAGTCATGACCCCTACTCATGGGCTCATGCTCGGCCCCCTTACTGA 783 0.6054 MDPAAVSPMLNKRDREISINDNPGTGDDEEEKDNEGEPTEGAVEVGTRRPRGRPPGSKNKPKPPIFVTRDSPNALRSHVMEVAGGHDVAESVAQFARRRQRGVCVLSGSGSVANVTLRQPAAPGAVVALHGRFEILSLTGAFLPGPAPPGSTGLTVYLAGGQGQVVGGSVVGSLVAAGPVIVIAATFANATYERLPLEEEEEGGQAPPPSGSPPAIGSSGGQHHSGLPELPIYNLPPNLLPNGGQLSHDPYSWAHARPPY* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0730 260 MobiDBLite consensus disorder prediction 197 241 - -
Vvi5g0730 260 MobiDBLite consensus disorder prediction 23 37 - -
Vvi5g0730 260 MobiDBLite consensus disorder prediction 1 70 - -
Vvi5g0730 260 ProSiteProfiles PPC domain profile profile. 72 208 IPR005175 -
Vvi5g0730 260 FunFam AT-hook motif nuclear-localized protein 75 202 - -
Vvi5g0730 260 SUPERFAMILY AF0104/ALDC/Ptd012-like 72 201 - -
Vvi5g0730 260 Pfam Plants and Prokaryotes Conserved (PCC) domain 76 188 IPR005175 -
Vvi5g0730 260 Gene3D - 75 203 - -
Vvi5g0730 260 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 26 255 IPR014476 GO:0003680
Vvi5g0730 260 CDD DUF296 76 159 IPR005175 -
Vvi5g0730 260 PIRSF ESCAROLA 4 260 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0730 Vvi-Chr5 7159856 7160638 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0730 9 260 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 67.816 6.42e-102 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0730 - - vvi:100249531 418.698