Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0729 ATGTTAAAAAGATTAGCTCCTGGGCTGTTGATTTCTTCTCTCCTGATATCCGCGTCTGCGGTTGACAATAGCTTCCCCAGGTGTAATTGTGAAGATGAGGGCTTTTGGAGCGTGGAGAACATTTTAGAGTGCCAAAAAGTGAGCGATTTCCTGATTGCGGTGGCCTATTTCTCGATCCCCATTGAGCTGCTTTACTTTGTCAGCTGCTCCAACGTCCCCTTCAAATGGGTCCTCTTTCAGTTCATTGCCTTCATTGTTCTATGTGGGCTCACTCATTTGCTCAATGGCTGGACTTATGGTCCGCACCCCTTTCAATTAATGCTCGCCCTCACCATTTTCAAATTTCTTACTGCCCTGGTCTCCTGTGCCACTGCAATCACACTCATCACTCTCATCCCTTTGCTTCTCAAAGTGAAGGTAAGAGAGTTCATGTTGAAGAAGAAGACTTGGGATCTTGGTCGAGAAGTAGGAATTATAAAGAAAAAGAAGGAAGCTGGCTTGCATGTCCGGATGCTTACTCACGAGATTCGCAAGTCACTTGATCGGCACACAATTTTGCATACAACTTTGGTTGAGTTATCCAACACATTGGATTTGCAGAACTGTGCTGTTTGGATGCCTAATGAGAATAAAACAGAGATGAACCTAACCCATGAGTTGAAAGGGCGGAATTTCTACAATTTCTCAATCCCAATTAATGACCCTGTTGTTGCAATGATTAAGAGGAGTGACGAAGTGCATACACTTAGGACGGACTCGGCCCTAGCTACTGCAAGCAGTGGAACTTCTGGTGAACCAGGACCTGTGGCTGCAATTCGGATGCCAATGCTTCGGGTTTCCAACTTTAAAGGGGGGACTCCTGAGCTGGTCCAGGCTTGTTATTCAATATTAGTTTTGGTACTTAAGAGTGGACAGGCTAGATCCTGGACCAGCCAAGAGCTTGACATAGTTAAGGTGGTTGCTGATCAGGTCGCTGTGGCTGTGTCCCATGCTGCCGTTCTTGAAGAGTCCCAGCTCATGAGAGACCAGTTGGCAGAGCAAAACCGTGCATTGCAACAGGCAAAGAGGAATGCAATGATGGCAAGCCAAGCAAGGAACTCATTTCAGAAGGTGATGAGTGATGGGATGAGGAGGCCAATGCACTCAATCTCAGGTTTGCTTTCAATGATGCAGGATGAGAAATTGAATAGTGAGCAGCGGCTCATCATTGATGCAATGGCAAAGACCAGCAATGTCCTCTCTACCTTGATAAATGATGTAATGGAAATCTCAACAAAGGATACTGGGAGATTCCAGTTAGATGTGAGATCTTTCCGGTTACATTCCATGATAAAGGAAGCAGCTTGCCTAGCCAAATGCCTATGTGTTTATAGGGGTTTTGGTTTTGCAATTGAGGTTGAGAAGTCCTTGCCTGATCATGTCATTGGTGAAGAAAGAAGGGTCTTTCAGGTGATTCTGCATATGGTTGGAAACCTGTTGAATGGCACCAATGGAGGAGGGTCAGTGACATTTCGGGTGTTATCAGAGACTGGAAGTCAAGGAAGGCATGATCAGAGATGGGCAACCTGGAAATCAAATTCATCTGATGGGTATGTTTATATCAAGTTTGAAATTGGGATTAACAATGCTGATCAGTCCGAGGGCTCGATTTCAACTGGCTCAATTTCAACTGTACAGCTTGGTGGTGGAAGACAAACCAGTGACCAAATTGATGAGGGACTGAGTTTCACCATGTGCAGAAGGCTAGCTCAGTTGATGCAAGGGAACATCTGGTTAGTCCCAAACCCTCAGGGATTTGCCAAAAGCATGGCTCTCGTTCTTCGCTTTCAACTTCAACCATCCATTGGAATCAACATTTCTGAACCAGGAGAATCTTCAGAGCACCCACATTCCAACTCTCTTTTCAGGGGCCTCCAAGTTCTATTAGCTGATGATGATGACACTAATAGGGCTGTGACCAGGAAGCTTCTTGAGAAGCTTGGTTGCATCGTTTCTGTTGTTTCATCTGGATTTGAATGCCTTGGTGCCCTTGGCCCAGCTGCATCCTCTTTCCAAATTGTTCTTTTGGATCTTCATATGCCCGAGTTGGATGGTTTTGAAGTTGCAATGAGAATTCGGAAGTTCAGGAGCCGCAGCTGGCCATTGATTGTTGCCTTGACAGCAAGTGCTGATGAAGATGTATGGGAAAGATGCTTGGAGATAGGAATGAATGGTATAATTCGAAAACCAGTTCTGCTGGATGGAATTGCTGAGGAGCTTCGAAGAGTCTTGCTGCAGGCAAACAATGTTGTGTGA 2295 0.454 MLKRLAPGLLISSLLISASAVDNSFPRCNCEDEGFWSVENILECQKVSDFLIAVAYFSIPIELLYFVSCSNVPFKWVLFQFIAFIVLCGLTHLLNGWTYGPHPFQLMLALTIFKFLTALVSCATAITLITLIPLLLKVKVREFMLKKKTWDLGREVGIIKKKKEAGLHVRMLTHEIRKSLDRHTILHTTLVELSNTLDLQNCAVWMPNENKTEMNLTHELKGRNFYNFSIPINDPVVAMIKRSDEVHTLRTDSALATASSGTSGEPGPVAAIRMPMLRVSNFKGGTPELVQACYSILVLVLKSGQARSWTSQELDIVKVVADQVAVAVSHAAVLEESQLMRDQLAEQNRALQQAKRNAMMASQARNSFQKVMSDGMRRPMHSISGLLSMMQDEKLNSEQRLIIDAMAKTSNVLSTLINDVMEISTKDTGRFQLDVRSFRLHSMIKEAACLAKCLCVYRGFGFAIEVEKSLPDHVIGEERRVFQVILHMVGNLLNGTNGGGSVTFRVLSETGSQGRHDQRWATWKSNSSDGYVYIKFEIGINNADQSEGSISTGSISTVQLGGGRQTSDQIDEGLSFTMCRRLAQLMQGNIWLVPNPQGFAKSMALVLRFQLQPSIGINISEPGESSEHPHSNSLFRGLQVLLADDDDTNRAVTRKLLEKLGCIVSVVSSGFECLGALGPAASSFQIVLLDLHMPELDGFEVAMRIRKFRSRSWPLIVALTASADEDVWERCLEIGMNGIIRKPVLLDGIAEELRRVLLQANNVV* 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0729 764 SUPERFAMILY CheY-like 635 757 IPR011006 -
Vvi5g0729 764 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 25 761 - -
Vvi5g0729 764 Pfam His Kinase A (phospho-acceptor) domain 365 429 IPR003661 GO:0000155|GO:0007165
Vvi5g0729 764 CDD REC_ETR-like 638 753 - -
Vvi5g0729 764 Pfam GAF domain 181 328 IPR003018 GO:0005515
Vvi5g0729 764 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 418 598 IPR036890 -
Vvi5g0729 764 PIRSF Ethylen_sen_hybr_HK 1 764 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Vvi5g0729 764 Gene3D - 638 763 - -
Vvi5g0729 764 SMART HisKA_10 364 429 IPR003661 GO:0000155|GO:0007165
Vvi5g0729 764 Gene3D - 330 427 - -
Vvi5g0729 764 CDD HisKA 362 424 IPR003661 GO:0000155|GO:0007165
Vvi5g0729 764 CDD HATPase_ETR2_ERS2-EIN4-like 470 607 - -
Vvi5g0729 764 Gene3D - 428 610 IPR036890 -
Vvi5g0729 764 ProSiteProfiles Histidine kinase domain profile. 371 609 IPR005467 -
Vvi5g0729 764 Coils Coil 334 364 - -
Vvi5g0729 764 SMART gaf_1 181 338 IPR003018 GO:0005515
Vvi5g0729 764 SMART REC_2 638 757 IPR001789 GO:0000160
Vvi5g0729 764 FunFam Ethylene receptor 4 331 425 - -
Vvi5g0729 764 FunFam Ethylene receptor 636 760 - -
Vvi5g0729 764 Pfam Response regulator receiver domain 640 750 IPR001789 GO:0000160
Vvi5g0729 764 ProSiteProfiles Response regulatory domain profile. 639 757 IPR001789 GO:0000160
Vvi5g0729 764 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 349 430 IPR036097 GO:0000155|GO:0007165
Vvi5g0729 764 Gene3D - 168 329 IPR029016 -
Vvi5g0729 764 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 476 597 IPR003594 -
Vvi5g0729 764 SUPERFAMILY GAF domain-like 184 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0729 Vvi-Chr5 7140851 7143996 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0729 22 761 Miscellaneous Gene Families AT3G04580 61.230 0.0 896
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vvi5g0729 GAF 6.7e-12 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0729 K14509 - vvi:100254638 1419.45