Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0728 ATGGAATTTTGGAAAAATGGAGGCTCAGAAACTTCAAGCGAAGAAAATGATAGGCCAGAGAAAGTCAAAGGTGAAAGGGGAGGTCGGCGCTCCTACGAATGCACATACTGCAAGCGAGGGTTCACCAACGCTCAGGCCCTGGGAGGGCACATGAACATACATAGGAAAGATCGAGCCAAGACCAAGCAGGTCACTGGTTCTTCAGGTTCAAGCAAACCCAATGAGGAGTACATGGCTTACAAAGATTTTGCACCATTCTCAAGCCAACCGGCACGGTATTATGAATCTTGTGAGGCACAGAGGAATTACCCCACGTATTTTCCGCCATCGGACTCTAGCTCTAGATATCCACATGCTTACCATGAAAACAACTGGTCTGCCCCAAATTCAGAACGTTTGAGTTTCAATGAACAGCGTTTGGGTGCAAATTTGAGCTTGCAAATCGGCCCCACATACCGAGGGGACAGCGGAATTGAAAGGCAATATGGGAAAGACGATGAAGTGGATTTGGAGCTTCGGCTTGGTCACTATCCATGA 537 0.4767 MEFWKNGGSETSSEENDRPEKVKGERGGRRSYECTYCKRGFTNAQALGGHMNIHRKDRAKTKQVTGSSGSSKPNEEYMAYKDFAPFSSQPARYYESCEAQRNYPTYFPPSDSSSRYPHAYHENNWSAPNSERLSFNEQRLGANLSLQIGPTYRGDSGIERQYGKDDEVDLELRLGHYP* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0728 178 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Vvi5g0728 178 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Vvi5g0728 178 MobiDBLite consensus disorder prediction 1 29 - -
Vvi5g0728 178 FunFam Zinc finger protein-like 28 55 - -
Vvi5g0728 178 Pfam C2H2-type zinc finger 32 56 - -
Vvi5g0728 178 SUPERFAMILY beta-beta-alpha zinc fingers 28 59 IPR036236 -
Vvi5g0728 178 Gene3D Classic Zinc Finger 11 87 - -
Vvi5g0728 178 PANTHER OS07G0101800 PROTEIN 12 176 - -
Vvi5g0728 178 MobiDBLite consensus disorder prediction 56 75 - -
Vvi5g0728 178 MobiDBLite consensus disorder prediction 11 29 - -
Vvi5g0728 178 SMART c2h2final6 32 54 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0728 Vvi-Chr5 7102567 7103103 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0728 10 178 C2H2 Transcription Factor Family AT4G17810 31.522 3.04e-15 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi5g0728 zf-C2H2_6 9.7e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0728 - - vvi:100252939 379.793