Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0727 ATGGAGAGGAACGGTATGAGCAATAAATTAAAAGACCATAGTATTGGATGTAGAGCCGTTGAAGACTGCAACATTAGCTACAACCACAACACGATTAAAGATTCATGGAACTGTTACGGCAGTGGAAGTCATGATGAAGATGATCTTGGTGGATATTCATGGCCTCCAAGATCTTATACATGCAGCTTCTGCAAAAGAGAATTCAGATCCGCTCAAGCTCTAGGTGGCCATATGAATGTTCATAGGAGAGACAGAGCCAGGCTGAGACGGTCACCTCCAAGGGATGATCAGTACACTATTCCTAATCTTAACCTCAAACCTAACCCTAATCTCTCAACCCCATCACCACCTTCTCTTCCAACAAGGCTTCCAGCATTTACCTGCCCATTACCTTCCTTGGCTGCTTCCCCTTTTTCTTCTTTATCTTCACCATCTTCAGCTTCACCTAGTGAACTGAATGCTGCACAATCTTTTTCTGGGGTTGAAGAATTTAATGGCGTCAACCAAGAAGATGAATGTAAGGTTTTGAAGATGGCAGAGTTTGTTAGGTTGGACTTAAAGATTGGTTTGCCTAGTGATTTAAAGGAGGATTTGGATTTGGAACTTCGACTTGGGTACTCCTAG 624 0.4279 MERNGMSNKLKDHSIGCRAVEDCNISYNHNTIKDSWNCYGSGSHDEDDLGGYSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRRSPPRDDQYTIPNLNLKPNPNLSTPSPPSLPTRLPAFTCPLPSLAASPFSSLSSPSSASPSELNAAQSFSGVEEFNGVNQEDECKVLKMAEFVRLDLKIGLPSDLKEDLDLELRLGYS* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0727 207 SMART c2h2final6 59 81 IPR013087 -
Vvi5g0727 207 PANTHER OS07G0101800 PROTEIN 34 206 - -
Vvi5g0727 207 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Vvi5g0727 207 SUPERFAMILY beta-beta-alpha zinc fingers 56 85 IPR036236 -
Vvi5g0727 207 Gene3D Classic Zinc Finger 55 103 - -
Vvi5g0727 207 Pfam C2H2-type zinc finger 59 83 - -
Vvi5g0727 207 MobiDBLite consensus disorder prediction 79 122 - -
Vvi5g0727 207 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 86 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0727 Vvi-Chr5 7094682 7095305 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0727 35 207 C2H2 Transcription Factor Family AT3G23130 45.055 2.31e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi5g0727 zf-C2H2_6 3.7e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0727 - - vvi:100258069 341.273