Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0726 ATGGAGAGGAACAATTTCAACAATAACTTGAAAGATCATAGTATTGGCTGTAGAGGCATTAAAGACTGCAGCAACAACCACAAGGTCAAGGATTCATGGAACTGTAACAGTGGAAGTTATGGAGAAGATTGTCCAGATGGATTTTCATGGCCTCCAAGATCTTATACATGTAGCTTCTGCAAAAGAGAATTCAGATCTGCCCAAGCTCTGGGTGGCCATATGAATGTTCACAGGAGAGATAGAGCCCGGCTGAGACAGTCACCTCCAAGGGATGGTCAGTACCCTATTCTTAATCTTAATCTCAATCCTAACCCTAATTTCTCAACATCGCCATCATCGTCTTCTCCTCCAACAAGGCTTCCACCATTTACTCGCACGTTACCTTCCTTGGTTTCTTCCCCTCTTTCCTCTTTATCTTCACCATCTTCTGCTTCACCTAGTGATCAAGTGAAGAAATGGGGTGTGGATGGTTCCATGCTCAACCCTTTGAGCCCGAGAGTCCTGGATTTAGCAAAGATGAAGACCACACAATCTTCTTTTGGGGTTGGAGAATATCATGGCTTCACCCAAGAAGATGAGTATAAGGTTCTGAAGAAGGCAGAGTTTGTTAGGTTGGACTTGGAGATTGGTCTACTTAGTGATTTAAAGGAGGATTTGGATTTGGAGCTTCGACTTGGATACTCCTAG 687 0.4367 MERNNFNNNLKDHSIGCRGIKDCSNNHKVKDSWNCNSGSYGEDCPDGFSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRQSPPRDGQYPILNLNLNPNPNFSTSPSSSSPPTRLPPFTRTLPSLVSSPLSSLSSPSSASPSDQVKKWGVDGSMLNPLSPRVLDLAKMKTTQSSFGVGEYHGFTQEDEYKVLKKAEFVRLDLEIGLLSDLKEDLDLELRLGYS* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0726 228 ProSitePatterns Zinc finger C2H2 type domain signature. 57 77 IPR013087 -
Vvi5g0726 228 MobiDBLite consensus disorder prediction 134 153 - -
Vvi5g0726 228 SUPERFAMILY beta-beta-alpha zinc fingers 52 81 IPR036236 -
Vvi5g0726 228 MobiDBLite consensus disorder prediction 134 149 - -
Vvi5g0726 228 SMART c2h2final6 55 77 IPR013087 -
Vvi5g0726 228 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 82 IPR013087 -
Vvi5g0726 228 Gene3D Classic Zinc Finger 51 94 - -
Vvi5g0726 228 MobiDBLite consensus disorder prediction 71 126 - -
Vvi5g0726 228 MobiDBLite consensus disorder prediction 97 114 - -
Vvi5g0726 228 Pfam C2H2-type zinc finger 55 79 - -
Vvi5g0726 228 PANTHER OS07G0101800 PROTEIN 30 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0726 Vvi-Chr5 7082504 7083190 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0726 47 228 C2H2 Transcription Factor Family AT3G23130 45.699 1.78e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi5g0726 zf-C2H2_6 4.3e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0726 - - vvi:100263211 383.259