Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0693 ATGCTACTCATCGTTTTTTCTCTATCTCCGTCACTTGTTGGGATCATGGCTTCTGTGCAAGAGACTGTTCTGGTAGTTCCGGTCGGGAAGAAGAATGCTAAGAAGGCGTCTGCTGGAACGAAGAAGCCTAAGGCTTCTCCGGCACATCCGCCGTACAGTGAGATGATAAACGAGGCTATAATCGCGCTGAAGGAGAGGACTGGTTCGAGCCAGATCGCCATCGCGAAATTCATTGAAGAGAAGCAAAAATCGGGTCTTCCGGCCAATTTTAAGAAGCTTTTGCTCGTTCAGTTGAAGAAGCTTGTGGCTTCTGAAAAGCTTGTGAAGGTGAAGAATTCATATAAGCTCCCGTCTGCCGCCGCTAAGAAGTCGGTGGCGTCAGCGAAGTCGGAAGCAGCGAAAGCGCCGGCGAAGAAGAAGCCTGCTGCGAGGCCGAAGGCTGTGACTAAAACTAAGTCTGCTTCTGTAAAGGTGAAATCCACTCCCATTAAAGCGAAGGCTGTGGTTAAGCCAAAGCCCAAGGGGAGACCGTCAAAAGCGGCCAAGAAGACTTCGACGGCAAAGTCACCAGGAAAGAAGGCCGTGGGAGCGGCAAAGTCTCTTAAGAAGACTCCGGTCAAGGCTGTGAAGAAAGGTCCTGTTAAAGCTCCAAAGAAGCCGAAGAGCATAAAGTCTCCGGTGAAGAAGGCGAAGTAG 696 0.5057 MLLIVFSLSPSLVGIMASVQETVLVVPVGKKNAKKASAGTKKPKASPAHPPYSEMINEAIIALKERTGSSQIAIAKFIEEKQKSGLPANFKKLLLVQLKKLVASEKLVKVKNSYKLPSAAAKKSVASAKSEAAKAPAKKKPAARPKAVTKTKSASVKVKSTPIKAKAVVKPKPKGRPSKAAKKTSTAKSPGKKAVGAAKSLKKTPVKAVKKGPVKAPKKPKSIKSPVKKAK* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0693 231 PRINTS Histone H5 signature 62 79 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vvi5g0693 231 PRINTS Histone H5 signature 140 154 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vvi5g0693 231 PRINTS Histone H5 signature 198 217 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vvi5g0693 231 PRINTS Histone H5 signature 35 56 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vvi5g0693 231 PRINTS Histone H5 signature 176 193 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vvi5g0693 231 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 48 118 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi5g0693 231 PANTHER HISTONE H1 32 219 - -
Vvi5g0693 231 SMART h15plus2 46 113 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi5g0693 231 MobiDBLite consensus disorder prediction 204 231 - -
Vvi5g0693 231 MobiDBLite consensus disorder prediction 131 231 - -
Vvi5g0693 231 FunFam Histone H1 43 130 - -
Vvi5g0693 231 Pfam linker histone H1 and H5 family 49 115 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi5g0693 231 SUPERFAMILY "Winged helix" DNA-binding domain 46 124 IPR036390 -
Vvi5g0693 231 Gene3D - 44 135 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0693 Vvi-Chr5 6653996 6654815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0693 50 123 Single Myb Histone (SMH) Gene Family AT1G72740 37.838 1.38e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0693 K11275 - vvi:100251147 286.189