Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi5g0693 | ATGCTACTCATCGTTTTTTCTCTATCTCCGTCACTTGTTGGGATCATGGCTTCTGTGCAAGAGACTGTTCTGGTAGTTCCGGTCGGGAAGAAGAATGCTAAGAAGGCGTCTGCTGGAACGAAGAAGCCTAAGGCTTCTCCGGCACATCCGCCGTACAGTGAGATGATAAACGAGGCTATAATCGCGCTGAAGGAGAGGACTGGTTCGAGCCAGATCGCCATCGCGAAATTCATTGAAGAGAAGCAAAAATCGGGTCTTCCGGCCAATTTTAAGAAGCTTTTGCTCGTTCAGTTGAAGAAGCTTGTGGCTTCTGAAAAGCTTGTGAAGGTGAAGAATTCATATAAGCTCCCGTCTGCCGCCGCTAAGAAGTCGGTGGCGTCAGCGAAGTCGGAAGCAGCGAAAGCGCCGGCGAAGAAGAAGCCTGCTGCGAGGCCGAAGGCTGTGACTAAAACTAAGTCTGCTTCTGTAAAGGTGAAATCCACTCCCATTAAAGCGAAGGCTGTGGTTAAGCCAAAGCCCAAGGGGAGACCGTCAAAAGCGGCCAAGAAGACTTCGACGGCAAAGTCACCAGGAAAGAAGGCCGTGGGAGCGGCAAAGTCTCTTAAGAAGACTCCGGTCAAGGCTGTGAAGAAAGGTCCTGTTAAAGCTCCAAAGAAGCCGAAGAGCATAAAGTCTCCGGTGAAGAAGGCGAAGTAG | 696 | 0.5057 | MLLIVFSLSPSLVGIMASVQETVLVVPVGKKNAKKASAGTKKPKASPAHPPYSEMINEAIIALKERTGSSQIAIAKFIEEKQKSGLPANFKKLLLVQLKKLVASEKLVKVKNSYKLPSAAAKKSVASAKSEAAKAPAKKKPAARPKAVTKTKSASVKVKSTPIKAKAVVKPKPKGRPSKAAKKTSTAKSPGKKAVGAAKSLKKTPVKAVKKGPVKAPKKPKSIKSPVKKAK* | 232 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi5g0693 | 231 | PRINTS | Histone H5 signature | 62 | 79 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
Vvi5g0693 | 231 | PRINTS | Histone H5 signature | 140 | 154 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
Vvi5g0693 | 231 | PRINTS | Histone H5 signature | 198 | 217 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
Vvi5g0693 | 231 | PRINTS | Histone H5 signature | 35 | 56 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
Vvi5g0693 | 231 | PRINTS | Histone H5 signature | 176 | 193 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
Vvi5g0693 | 231 | ProSiteProfiles | Linker histone H1/H5 globular (H15) domain profile. | 48 | 118 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
Vvi5g0693 | 231 | PANTHER | HISTONE H1 | 32 | 219 | - | - | |
Vvi5g0693 | 231 | SMART | h15plus2 | 46 | 113 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
Vvi5g0693 | 231 | MobiDBLite | consensus disorder prediction | 204 | 231 | - | - | |
Vvi5g0693 | 231 | MobiDBLite | consensus disorder prediction | 131 | 231 | - | - | |
Vvi5g0693 | 231 | FunFam | Histone H1 | 43 | 130 | - | - | |
Vvi5g0693 | 231 | Pfam | linker histone H1 and H5 family | 49 | 115 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
Vvi5g0693 | 231 | SUPERFAMILY | "Winged helix" DNA-binding domain | 46 | 124 | IPR036390 | - | |
Vvi5g0693 | 231 | Gene3D | - | 44 | 135 | IPR036388 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi5g0693 | Vvi-Chr5 | 6653996 | 6654815 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi5g0693 | 50 | 123 | Single Myb Histone (SMH) Gene Family | AT1G72740 | 37.838 | 1.38e-09 | 55.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi5g0693 | K11275 | - | vvi:100251147 | 286.189 |