Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0691 ATGATGGATTACTTCTTCGATTACGGGCACCAACATGAGATGTTCTGGTTTGAGTATCCACCGATGAACTCTAATCCACCCACTCAAGAATTCCATTCAGAAAACAGTGCTTTTGCGCCATACAGGAGCCAACCCATTCCAGGAGACGGAGGGGTTGGAGGGAGTAATCGGAGGAACATGAACAGTAGGATGATGGAGTTGTTGAGAGGCAATTGGAGCGCGATCAGAAATTCCGGAGAATCCGATCGAGGGCGGTCTTACAGGCACATGATGAGAGAGCGAGCCAGGCGAGAGAATCAGAAGCAGAGTTACTTGGCTCTGCATTCTCTGTTGCCCCATGGGACCAAGAGTGATAAGAATTCGATCATTGAAATGGCGAAGCATGAAATCCAGAAGCTGCAGAGCTCCAAGGAGGAACTGAAGAGGCGGAATCAGGAGCTCAATGCGAAATTAAGGGAGGAAGCAATGGTGCTCAATATAGGATTCAGGGTTGGGAATCCTTCTTCTGGGATTGATTCAATGGAGGAAGTTCTGAAATGCCTCAAAAATATGGACTTGAAAACAACTGCCATCCACTCCCAATTTTCTCCTCAGCAATTTTCAGCAGCTGTCAAGATACAAACCCAGATAGAAAAAGCTTTCAAAATGGATAGAGAAAGAAATTCCAAGATGCAGAGAGATGTAATTATAATTTATTTTTTTCTTCTACGTCCTCTTTCTCTAGGTGGCTCAAATAGATTTTTTATTTTTTAA 753 0.4382 MMDYFFDYGHQHEMFWFEYPPMNSNPPTQEFHSENSAFAPYRSQPIPGDGGVGGSNRRNMNSRMMELLRGNWSAIRNSGESDRGRSYRHMMRERARRENQKQSYLALHSLLPHGTKSDKNSIIEMAKHEIQKLQSSKEELKRRNQELNAKLREEAMVLNIGFRVGNPSSGIDSMEEVLKCLKNMDLKTTAIHSQFSPQQFSAAVKIQTQIEKAFKMDRERNSKMQRDVIIIYFFLLRPLSLGGSNRFFIF* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0691 250 Pfam Helix-loop-helix DNA-binding domain 88 134 IPR011598 GO:0046983
Vvi5g0691 250 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 79 148 IPR036638 GO:0046983
Vvi5g0691 250 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 84 133 IPR011598 GO:0046983
Vvi5g0691 250 CDD bHLH_AtbHLH_like 89 140 IPR045239 -
Vvi5g0691 250 Coils Coil 123 157 - -
Vvi5g0691 250 Gene3D - 77 150 IPR036638 GO:0046983
Vvi5g0691 250 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 23 213 IPR044658 -
Vvi5g0691 250 SMART finulus 90 139 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0691 54 210 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G43650 47.826 7.99e-43 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi5g0691 HLH 7.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0691 - - vri:117914079 481.485