Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0686 ATGATGTCGGGCCCGGTGGCCAAGGTTCCCCGGGAGAGGCTCGCCGCATGCATGACATGTCGTATCTGCAACAAGCTCTTCGATGACGCCACCACCATATCTGAATGTCTCCACACCTTTTGCAGGAAGTGCATATTTGACAAGATAACAGAAGATGAGTTGGATTATTGTCCTGTATGCAATACAAATCTAGGCTGTGCTCCACTTGAGAAACTAAGGCCAGACCACAATTTGCAAGATTTAACAGCCAAAATCTTCCCTTCAGAAAAATCAAAGGTCGTTGCAACTGAAGAAGTGGCCTCAGTTCCATTGCCAGCTAGAAGAAAGGAGAGATCTCTGTCCTCATTAGGGGTTAGCACACCTAGAGTGTCATCCCAGACTGTTATGACAGGAAAAAGAACAAAATCTGCTGCAAGAAGGCTTTCTGCTGCACGAGAATCCACTTTTCCTGTTGAGGAGCCCATTAAGAAAGAGGAGGATTATCCAGAGAACCCGAGCTCACCTGAAATTCTAAATAAGAGAGCACAAAATAAAAAGAATCTAAAGGAGAATTATTCTAGTGCTGAGTCATCTAAGCAACACATTAATAAAGGTTCTTTGGCCAAATCAACACCTTCACATGTTGATGACAAAGAAGCGCATGTCCCTAAAGCAAAACTTAAAGAACGTGGCAAGTTAAAATTTCAGGATGAAGAAAATGGCACAACTCATGTGCCATCTGGTTCAGTGAAACCGAGAATCCGTGGTGGTCGACAAAAAAAGGCAGCTACTCCAGAGGGGTTTAGTATTCCAGCACTAGCTGAGAATGATGGAAACAGCAAATGTAATATAAGGGCTTGTCCAGTTTGGTTCTCATTAGTTGCTTCTGATAACCAGGAAGGTGATGCACCCTTGCCACAGATACCTTCAAGCTACTTGAGGATGAGGGATGGTCATTTGCCTGTTTCATTTCTCCAGAAGTACCTTGTCCAAAAACTGCATCTTAATAGTGAATCTGAGGTGGAGATCACACTGCGGGGTCAGCCGGTTGTTCCCACATTGCAGCTGCAGAGCTTAGTAGATTTGTGGTTCCAAGCAGCAGCACCAACAACATCAGAAGCAACACAGCCACCCATTGGCAGCTCAGCCAAGGAGTTTGTGATGGTGCTGTCATATGGTCGCAAACCTAAGACCCCATAA 1179 0.4487 MMSGPVAKVPRERLAACMTCRICNKLFDDATTISECLHTFCRKCIFDKITEDELDYCPVCNTNLGCAPLEKLRPDHNLQDLTAKIFPSEKSKVVATEEVASVPLPARRKERSLSSLGVSTPRVSSQTVMTGKRTKSAARRLSAARESTFPVEEPIKKEEDYPENPSSPEILNKRAQNKKNLKENYSSAESSKQHINKGSLAKSTPSHVDDKEAHVPKAKLKERGKLKFQDEENGTTHVPSGSVKPRIRGGRQKKAATPEGFSIPALAENDGNSKCNIRACPVWFSLVASDNQEGDAPLPQIPSSYLRMRDGHLPVSFLQKYLVQKLHLNSESEVEITLRGQPVVPTLQLQSLVDLWFQAAAPTTSEATQPPIGSSAKEFVMVLSYGRKPKTP* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0686 392 MobiDBLite consensus disorder prediction 150 164 - -
Vvi5g0686 392 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 5 390 IPR044807 GO:0004842
Vvi5g0686 392 MobiDBLite consensus disorder prediction 204 232 - -
Vvi5g0686 392 SUPERFAMILY RING/U-box 16 86 - -
Vvi5g0686 392 MobiDBLite consensus disorder prediction 110 256 - -
Vvi5g0686 392 CDD RING-HC_PCGF 18 61 - -
Vvi5g0686 392 MobiDBLite consensus disorder prediction 181 203 - -
Vvi5g0686 392 SMART ring_2 20 60 IPR001841 -
Vvi5g0686 392 Pfam Zinc finger, C3HC4 type (RING finger) 20 60 - -
Vvi5g0686 392 ProSiteProfiles Zinc finger RING-type profile. 20 61 IPR001841 -
Vvi5g0686 392 MobiDBLite consensus disorder prediction 113 133 - -
Vvi5g0686 392 ProSitePatterns Zinc finger RING-type signature. 36 45 IPR017907 -
Vvi5g0686 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 111 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0686 Vvi-Chr5 6592794 6599439 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0686 1 309 C3H Transcription Factor Family AT2G30580 45.773 2.39e-75 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0686 K16277 - vvi:100245936 758.059