Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0685 ATGGGTCGAGAAGGATACGTTGTGCCGGCGGACCCGCAGGCAGCAATGAAGAAGAAAACGGCGTCGAGGAATTGGATAATGATGGATTGCAGTGGAGAGAAGACTGTTCTCGATTTGGACAAGTATGCGATTATGCATCGTGTTCAGATTCATGCCAGAGATCTTCGGATTCTTGATCCCCTCTTGTCCTACCCTTCTACTATATTGGGTCGAGAGAGGGCCATTGTTCTGAACTTAGAGCATATCAAGGCTATCATCACTGCTGAAGAGGTGTTGCTTCGAGATCCATCAGATGAAAATGTTATTCCTGTTGTTGAGGAGCTTCAAAGGCGACTGCCTCCTGTTAATGCCTTTCGCCAAGGTCAAGGAGATGGGAAAGATTATGGGCACCATGATGTTGAAGCAGGTGAAGAAGATGAGTCTCCCTTTGAATTCCGGGCTCTTGAGGTGGCTTTGGAAGCCATTTGTAGTTTTCTTGCTGCACGTACAACAGAACTGGAAACTGCTGCTTATCCAGCTTTGGATCAGCTTACGTCCAAGATTAGTAGCCTTAATTTGGATCGGGTTCGTAAATTGAAGAGTGCAATGACGAGATTGACTGCTCGGGTTCAAAAGGTGAGGGATGAGCTTGAACAACTTCTGGATGATGATGATGATATGGCTGATCTTTATCTGTCCAGAAAATTGGCTGGTGCATCTTCACCAGTTAGCGGCTCAGGTGCCCCCAATTGGTTTGCTGCCTCCCCCACTATTGGCTCAAAAATCTCCAGGGCTTACTTTATGCAAATTGATGGCACATTGAACAAATTAACTACGTTGCGAGAATATATTGATGATACGGAGGATTATATCAACATTCAGCTTGACAATCATCGAAATCAGTTGATTCAGTTAGAGCTCTTTTTAAGTTCTGGAACAGTTTGTTTATCCATCTATTCTTTGGTGGCTGGAATATTTGGCATGAATATTCCCTATACTTGGAATGATGATCATGGGTTCATGTTCAAATGGGTGGTTATCGTCACAGGTGTAAGTTGTGCTCTTCTTTTCGTAGTGATCATGTCATATGCTCGGCACAAGGGTCTTGTTGGATCCTGA 1098 0.4426 MGREGYVVPADPQAAMKKKTASRNWIMMDCSGEKTVLDLDKYAIMHRVQIHARDLRILDPLLSYPSTILGRERAIVLNLEHIKAIITAEEVLLRDPSDENVIPVVEELQRRLPPVNAFRQGQGDGKDYGHHDVEAGEEDESPFEFRALEVALEAICSFLAARTTELETAAYPALDQLTSKISSLNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKLAGASSPVSGSGAPNWFAASPTIGSKISRAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVAGIFGMNIPYTWNDDHGFMFKWVVIVTGVSCALLFVVIMSYARHKGLVGS* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0685 365 Coils Coil 189 216 - -
Vvi5g0685 365 FunFam Magnesium transporter MRS2-I 103 295 - -
Vvi5g0685 365 CDD Mrs2_Mfm1p-like 25 362 IPR039204 -
Vvi5g0685 365 Pfam CorA-like Mg2+ transporter protein 262 353 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Vvi5g0685 365 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 301 353 IPR045863 -
Vvi5g0685 365 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 14 363 IPR039204 -
Vvi5g0685 365 Gene3D Magnesium transport protein CorA, transmembrane region 302 360 - -
Vvi5g0685 365 Gene3D - 11 96 - -
Vvi5g0685 365 FunFam Magnesium transporter MRS2-1 13 96 - -
Vvi5g0685 365 Gene3D Magnesium transport protein CorA, transmembrane region 104 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0685 Vvi-Chr5 6576017 6586068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0685 1 338 MRS2 Gene Family AT5G64560 76.294 2.20e-178 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0685 K16075 - vvi:100244262 676.781