Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0682 ATGGAAGTTGGCCGGAAAATGTCGAGCATGCTCGGGGCTGAGCGTGGTTTTGATTTCAAAGAGACTGAACTCTGTCTGGGGCTGCCTGGTGGAGGTGGAGGTGAAGCCGAGACGCTTAAGGCTTCTGGCAAGAGGGGGTTCTCCGAGACTGTTGATCTCAAACTCAACCTTCAGTCCAAGGAATCAGTAGTGGATCTGAACGAGAATGTCAAGTGTCCACCCAAGGAGAAGAACCTCCTTCCTTGCACCAAGGATCCGGCCAAACCACCTGCCAAGGCACAGGTGGTGGGTTGGCCACCAGTTCGATCATTTAGGAAGAACATAATGGCTCAGAAGAACAGCAGCGAGGAGGGTGAGAAGGGAAGCAGCGGTGCTGCATTCGTGAAGGTTTGCATGGATGGCGCGCCATATCTTCGCAAGGTGGACTTAAAGATGTACAAGAGCTACCAAGAACTCTCTGATGCATTAGGCAAGATGTTCAGTTCCTTCACCATGGGCAACTATGGGGCCCAGGGAATGATAGATTTTATGAATGAGAGCAAGTTGATGGATCTTTTGAACAGCTCTGAATATGTTCCAACCTATGAAGATAAGGATGGAGACTGGATGCTCGTGGGTGATGTTCCATGGGAGATGTTTGTTGATTCATGCAAGCGCTTGCGTATAATGAAAGGATCAGAAGCAATTGGTCTTGCACCAAGAGCAATGGAGAAGTGTAAGAATAGATGCTGA 732 0.4904 MEVGRKMSSMLGAERGFDFKETELCLGLPGGGGGEAETLKASGKRGFSETVDLKLNLQSKESVVDLNENVKCPPKEKNLLPCTKDPAKPPAKAQVVGWPPVRSFRKNIMAQKNSSEEGEKGSSGAAFVKVCMDGAPYLRKVDLKMYKSYQELSDALGKMFSSFTMGNYGAQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLAPRAMEKCKNRC* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0682 243 Gene3D - 119 237 - -
Vvi5g0682 243 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 18 230 IPR003311 GO:0005634|GO:0006355
Vvi5g0682 243 Pfam AUX/IAA family 22 234 IPR033389 -
Vvi5g0682 243 SUPERFAMILY CAD & PB1 domains 122 224 - -
Vvi5g0682 243 ProSiteProfiles PB1 domain profile. 125 225 IPR000270 GO:0005515
Vvi5g0682 243 FunFam Auxin-responsive protein 120 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0682 Vvi-Chr5 6548474 6550337 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0682 117 233 B3 DNA Binding Superfamily AT4G23980 31.624 2.90e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vvi5g0682 AUX_IAA 3.4e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0682 K14484 - vvi:100254530 476.092