Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0681 ATGGAAGGTGCTGTGGCATATGAGAGCGATCTGAACTTGAAGGCAACCGAGCTTAGACTGGGGTTGCCGGGAAGGGATGAGGCTGAGAAAGAAGCACTTTCTGGTGTTAGAAACAACAAGAGAGCGTCGCCTGACACAAGTGATGAGTGTGGATCCAAGGGAAGTTCTAATGGTGATCGTGAAAATGCTCCTGCCACGAAGGCACAAGTTGTAGGGTGGCCACCAATCCGATCCTTTCGGAAAAATAGCTTCCAACCGAAGAAGACTGAGGCGGAGGCTGCTGGAATGTTCGTGAAAGTAAGCATGGATGGAGCTCCTTACCTCAGAAAGATTGATCTGAAGGTTTACAAAGGCTATCCGGAGCTCCTTCAGGCTCTACAGAATATGTTCAAATTCACCATAGGTGATTATTCAGAGAGAGAGGGCTACAAGGGATCAGAATATGTACCCACTTATGAAGACAAAGACGGTGACTGGATGCTGGTTGGCGATGTTCCATGGGACATGTTCATGTCATCCTGCAAAAGACTGAGAATCATGAAAGGATCAGACGCTAGAGGCTTGGGTTGTGGTGCATAA 579 0.4784 MEGAVAYESDLNLKATELRLGLPGRDEAEKEALSGVRNNKRASPDTSDECGSKGSSNGDRENAPATKAQVVGWPPIRSFRKNSFQPKKTEAEAAGMFVKVSMDGAPYLRKIDLKVYKGYPELLQALQNMFKFTIGDYSEREGYKGSEYVPTYEDKDGDWMLVGDVPWDMFMSSCKRLRIMKGSDARGLGCGA* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0681 192 MobiDBLite consensus disorder prediction 22 67 - -
Vvi5g0681 192 SUPERFAMILY CAD & PB1 domains 91 181 - -
Vvi5g0681 192 Gene3D - 89 192 - -
Vvi5g0681 192 FunFam Auxin-responsive protein 90 192 - -
Vvi5g0681 192 Pfam AUX/IAA family 52 189 IPR033389 -
Vvi5g0681 192 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 186 IPR003311 GO:0005634|GO:0006355
Vvi5g0681 192 MobiDBLite consensus disorder prediction 48 63 - -
Vvi5g0681 192 ProSiteProfiles PB1 domain profile. 95 182 IPR000270 GO:0005515
Vvi5g0681 192 MobiDBLite consensus disorder prediction 22 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0681 Vvi-Chr5 6536421 6537316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0681 42 192 B3 DNA Binding Superfamily AT5G62000 26.923 2.01e-10 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vvi5g0681 AUX_IAA 2.5e-59 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0681 K14484 - vvi:100259648 395.201