Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0676 ATGGCCACCAACCCGCCCGAAGGTTACGCCGATGATTTCCTGGAACAAATCCTCGCAATTCCCTCCTATCCTGGACACGACCCTAATATGGTGGGAACGGGTTCTACCATGGTGCTGCAGCTGAGTTCAGGCGACGGCTCAGGCCACGTCGCCGGAGGTGGCTTCCAGGGGCCGGTCTTTCCGTTAGGTCTGAGCTTGGAGAGCGGGATTCCGGCGACACAGGTGGCGCCAGGAAGTGGCGAGCGGTTTCGAGATGACGTTGATGCCAGAGGTTCTTCAGGGAGGAGCGAGAGAGAGTCGGTGCATTTGGATGGTTTGTTTCCGGCGTATGGACATGTACAGTCTCTCTCCGTCCGACCCGCCGTTCCTCAGGTTCACCAGGCTTTTCATGGCCAGCCAACTCCTGTCCCAATTACTGCTGCACCACACCCACCAGCTATCCGCCCAAGGGTGCGTGCTCGGCGTGGACAAGCCACTGATCCTCACAGCATTGCTGAGCGGCTACGTAGAGAGAGGATAGCAGAAAGAATGAAGGCTTTGCAAGAACTTGTCCCTAGCTCCAACAAGACGGATAGGGCTGCAATGCTTGATGAAATTGTGGACTATGTGAAGTTCCTAAGGCTCCAAGTCAAGGTTTTGAGCATGAGTAGACTGGGAGGTGCTGGTGCAGTGGCACAACTCGTGGCTGACATCCCATTGCCAGCAGTTGAGGGAGAAACGGGTGAAGGTGGAAGCAACCAGCAAGCCTGGGATAAATGGTCTAATGATGGCACAGAACGAGAAGTAGCAAAGCTCATGGAAGAAGATGTTGGAGCTGCTATGCAGTTCCTCCAATCCAAAGCACTGTGCATCATGCCCATATCACTTGCTGCAGCAATATACCCTGCACACCAAACTGATACCCCTACGCTCATCAAGCCTGAGCCAAATGCTCCATCCTAG 942 0.5456 MATNPPEGYADDFLEQILAIPSYPGHDPNMVGTGSTMVLQLSSGDGSGHVAGGGFQGPVFPLGLSLESGIPATQVAPGSGERFRDDVDARGSSGRSERESVHLDGLFPAYGHVQSLSVRPAVPQVHQAFHGQPTPVPITAAPHPPAIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSSNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADIPLPAVEGETGEGGSNQQAWDKWSNDGTEREVAKLMEEDVGAAMQFLQSKALCIMPISLAAAIYPAHQTDTPTLIKPEPNAPS* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0676 313 FunFam Transcription factor bHLH66 154 219 - -
Vvi5g0676 313 SMART finulus 163 212 IPR011598 GO:0046983
Vvi5g0676 313 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 157 206 IPR011598 GO:0046983
Vvi5g0676 313 Gene3D - 152 214 IPR036638 GO:0046983
Vvi5g0676 313 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 60 291 - -
Vvi5g0676 313 MobiDBLite consensus disorder prediction 81 99 - -
Vvi5g0676 313 Pfam Helix-loop-helix DNA-binding domain 162 206 IPR011598 GO:0046983
Vvi5g0676 313 MobiDBLite consensus disorder prediction 74 99 - -
Vvi5g0676 313 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 155 216 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0676 Vvi-Chr5 6435306 6441073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0676 55 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 63.158 1.38e-91 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi5g0676 HLH 3.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0676 - - vvi:100264830 560.066