Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0675 ATGAAGCTCAAACCCCTAAACGACACCGTTTCTTCTCTCCTGCTTTTCTTCTTCCTCTGCTCCCTCCATCTCCACTACTCCCAGGCCCAGCCTGAACCCAACGCCACGGGCTACCCCTGCTCCGCCAACCTCTCCTCCTACCCCTGCCACACCTTCGCCTTTTACACTGCCACTTCTCCCAACTTCCTCGACCTAGCTTCCATTGGCGACCTCTTCTGGGTCAGCCGCCTCATGATCTCCGAGCCCAGCAACATCTCCTCCCCGTCCAACCCCCTTGTCGCCGGTCAAAGCCTCTTCGTCCCTCTCAATTGCTCCTGCAACTCCGTTAACACCACCACCGCTATCTCTTACGCCAATCTCAGCTACACCATCAAGAGTGGCGACACCTTCTACCTCGTCTCCACTTTCAGCTTCCTCAACCTCACCACCTACTATTCCGTCGAAATTGTGAATCCTACTCTCGTTCCCACTGATCTCGATGTCGGCGATAAAGTCATTTTCCCGATCTTCTGCAAGTGCCCCAACGAAACCCAGTTAAGAAACGGAGTGAATTTTCTCATTTCCTATGTGTTTCAGCCTTCTGATAACTTGACTGGTGTTGCTGCATCGTTGGGGTCAGATACAGCGTCTATAATAGACGTTAATGGAGATAATATTCAGCCCTTCCAGACCATTTTCGTGCCGGTTTCCCGGCTTCCAAACATATCACAGCCTAATGTGACCGCTTCGGTGGCGACCTCTGTTCGGAAGGTTGAGAGAAAGGGGGTGATTATAGGATTGGCAATTGGGTTGGGAGTGTGTGGGATCTTGTTGGTTCTGTTGATTGGGGTGTGGGTTTATAGACATGTTATGGTGGAGAAGATCAAGGAAATTGAGGGAGATAAGGAGAGGCCTTTGGTTGGAAGAGGGACGGGGTTGAAGGCGGAGGAGGTGAATTTAATGGCCGATGTTTCGGATTGTTTGGACAAGTATAAAGTGTACGGGATTGAAGAATTGAGGGATGCAACTGGTGGGTTTAGTGAGCGTTCCCTGATCCAAGGGTCTGTGTATAAAGGGTCTATTGATGGAGAGCTCTATGCCATCAAGAAGATGAAGTGGAATGCCTATGAAGAGCTGAAGATCTTGCAAAAGGTGAACCATGGCAATCTGGTGAGGCTTGAGGGCTTCTGCATAGACCCTGAAGATGCAACTTGCTATCTAGTTTACGAGTTTGTTGAAAATGGATCTCTACAGTCATGGTTGCATGGAGACAGGGATGAAAAACTAAACTGGAAAAATAGGCTAAGAATTGCTATAGATGTTGCAAATGGCCTCCAATACATTCATGAGCATACGAGACCGCGAGTTGTGCATAAAGACATCAAAAGCAGCAATATTCTATTAGATGGAAACATGAGAGCCAAGATTGCCAATTTCGGATTAGCGAAATCTGGCTGCAATGCCATAACCATGCACATTGTTGGAACCCAAGGTTATATTGCACCAGAGTATCTGGCAGATGGTGTAGTTTCAACAAGAATGGATGTTTTCTCGTTTGGGGTGGTTCTGCTTGAGCTGATCTCAGGGAAGGAGGCAGTGGACGAAGAGGGAAGGGTTCTGTGGATGAGCGCAAGAGGAATTTTGGAGGGGAAGGACGAGAAGGTGAAGGCAAAGAGAGTGAAGGATTGGATGGACGAAGGTCTTCTTAGGGAGTCTTGCTCCATGGACAGTGTGATCAATGTGATGGCTGTTGCCACTGCTTGTACACACAGAGATCCTTCAAAGAGGCCCAGCATGGTGGATATTGTGTATGCTTTGTGCAAGTGTGAGGATTTCTTCTTTGACATATCTGAAGATGGATTGGCTCCCGCTGCAGTTATAGCTAGATAG 1869 0.4826 MKLKPLNDTVSSLLLFFFLCSLHLHYSQAQPEPNATGYPCSANLSSYPCHTFAFYTATSPNFLDLASIGDLFWVSRLMISEPSNISSPSNPLVAGQSLFVPLNCSCNSVNTTTAISYANLSYTIKSGDTFYLVSTFSFLNLTTYYSVEIVNPTLVPTDLDVGDKVIFPIFCKCPNETQLRNGVNFLISYVFQPSDNLTGVAASLGSDTASIIDVNGDNIQPFQTIFVPVSRLPNISQPNVTASVATSVRKVERKGVIIGLAIGLGVCGILLVLLIGVWVYRHVMVEKIKEIEGDKERPLVGRGTGLKAEEVNLMADVSDCLDKYKVYGIEELRDATGGFSERSLIQGSVYKGSIDGELYAIKKMKWNAYEELKILQKVNHGNLVRLEGFCIDPEDATCYLVYEFVENGSLQSWLHGDRDEKLNWKNRLRIAIDVANGLQYIHEHTRPRVVHKDIKSSNILLDGNMRAKIANFGLAKSGCNAITMHIVGTQGYIAPEYLADGVVSTRMDVFSFGVVLLELISGKEAVDEEGRVLWMSARGILEGKDEKVKAKRVKDWMDEGLLRESCSMDSVINVMAVATACTHRDPSKRPSMVDIVYALCKCEDFFFDISEDGLAPAAVIAR* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0675 622 SMART LysM_2 121 168 IPR018392 -
Vvi5g0675 622 SMART LysM_2 188 228 IPR018392 -
Vvi5g0675 622 SUPERFAMILY Protein kinase-like (PK-like) 327 599 IPR011009 -
Vvi5g0675 622 Pfam Protein kinase domain 347 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0675 622 ProSiteProfiles Protein kinase domain profile. 294 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0675 622 SMART serkin_6 339 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0675 622 Gene3D Phosphorylase Kinase; domain 1 310 404 - -
Vvi5g0675 622 Gene3D Transferase(Phosphotransferase) domain 1 405 609 - -
Vvi5g0675 622 FunFam PTI1-like tyrosine-protein kinase 3 405 607 - -
Vvi5g0675 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 449 461 IPR008271 GO:0004672|GO:0006468
Vvi5g0675 622 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 12 601 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0675 Vvi-Chr5 6427146 6430022 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0675 14 601 Receptor kinase-like Gene Family AT2G23770 32.325 1.08e-80 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vvi5g0675 Pkinase 1.5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0675 - - vri:117914713 1179.47