Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0671 ATGGAACCTACCCCTGCCGGGGTTATCCTTGGCAAGTACAAACTCGGCCGCCTTCTCGGCCGAGGCAGCTTCGCCAAGGTGTACCAGGCCCACTCCATCACCGACGGCACTGCCGTGGCCGTGAAGATCATGGACAAGGCACGAAGTGTTGAGGCCGGCATGGAGTCTCGGATCGTTCGCGAAGTGACTGCCATGCGGAGCCTTCAGCATCCCAACATCCTCAAAATCTACGAGATCATGGCCACTAAGTCCAAGATTTACTTGATTATTGAGTTGGCCAAAGGAGGCGAACTCTTCACCAAAATCTCCCGCCGCGGGCGCCTCACTGAGGCAGCGGCGCGCCGTTACTTCCAACAACTGGTATCGGCTCTCTTGTTCTGCCACCAGAACGGCGTGGCTCACCGCGACATGAAGCCGCAGAACCTTCTCCTGGACCAGGACGGTAACCTCAAGGTCTCCGACTTCGGGCTGTCCGCGCTTCCGGATCAACTTAAGAACGGCCTGCTCCACACAGCTTGTGGCACGCCTGCGTACACGGCGCCGGAGGTCGTTTCTCGGAAAGGCTACGACGGCGCAAAGGCGGACGCGTGGTCTTGCGGAGTCATACTTTTCGTCTTTCTTTCTGGCTTTCTCCCGTTCGATGATAGTAATCTCGTGACAATGTACCGGAAAATCCATCGTCGGGATTACCAGTTTCCGTCTTGGATCTCCAGGCCGGCGCGATCGGTAATATCACAGTTGCTCGATCCGAATCCTAATAAAAGGATGAGCATCGAAGCGCTGATGGAATCTGCCTGGTTCAAGAAATCTACGCCGGCGAAAAAACTTGAACATGCGAGTTCGTTTGATTCAGACATGGAATCAATGAAAGTTTGTGAATATGGTTCAGCGCCGCTAACCATGAATGCATTCGACATAATATCGATGTCGTCTGGGTTGGACCTGTCGGGGCTTTTCTTCGAAGCAGCAGCGAATAAGAGGGAGAAGAGGTTCATGTCGAGGGCATCAGCAGAGATAACTGTGGAGAAGATGAGAGAGGTTGGTGAGAAATTGGGATACGGTGTTGAGAGAGGGAAGGTTGGAAGTATAAGGAGGGAGGCGGGAAGGGTGGTTCTGTTGGTCGAAGTTTCAGAAGTTGCTCCATCATTGTTACTAGTGGAGGTGCAGGTGGTAGACGGAGGAGAATTTGAGGAGTTGAAATGGGAAATTGTGAAAGCTGGGCTTGAAGATATAGTTGTTTCATGGGAGGGTAGTGGGATGTAG 1263 0.5289 MEPTPAGVILGKYKLGRLLGRGSFAKVYQAHSITDGTAVAVKIMDKARSVEAGMESRIVREVTAMRSLQHPNILKIYEIMATKSKIYLIIELAKGGELFTKISRRGRLTEAAARRYFQQLVSALLFCHQNGVAHRDMKPQNLLLDQDGNLKVSDFGLSALPDQLKNGLLHTACGTPAYTAPEVVSRKGYDGAKADAWSCGVILFVFLSGFLPFDDSNLVTMYRKIHRRDYQFPSWISRPARSVISQLLDPNPNKRMSIEALMESAWFKKSTPAKKLEHASSFDSDMESMKVCEYGSAPLTMNAFDIISMSSGLDLSGLFFEAAANKREKRFMSRASAEITVEKMREVGEKLGYGVERGKVGSIRREAGRVVLLVEVSEVAPSLLLVEVQVVDGGEFEELKWEIVKAGLEDIVVSWEGSGM* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0671 420 SUPERFAMILY Protein kinase-like (PK-like) 9 276 IPR011009 -
Vvi5g0671 420 FunFam Non-specific serine/threonine protein kinase 4 292 - -
Vvi5g0671 420 Gene3D Kinase associated domain 1, KA1 298 413 - -
Vvi5g0671 420 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 9 389 - -
Vvi5g0671 420 ProSiteProfiles Protein kinase domain profile. 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0671 420 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Vvi5g0671 420 CDD CIPK_C 302 408 - -
Vvi5g0671 420 Pfam Protein kinase domain 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0671 420 FunFam Non-specific serine/threonine protein kinase 296 413 - -
Vvi5g0671 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Vvi5g0671 420 FunFam Non-specific serine/threonine protein kinase 6 97 - -
Vvi5g0671 420 Pfam NAF domain 298 356 IPR004041 GO:0007165
Vvi5g0671 420 Gene3D Phosphorylase Kinase; domain 1 9 94 - -
Vvi5g0671 420 ProSiteProfiles NAF domain profile. 296 320 IPR018451 GO:0007165
Vvi5g0671 420 Gene3D Transferase(Phosphotransferase) domain 1 95 294 - -
Vvi5g0671 420 SMART serkin_6 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0671 Vvi-Chr5 6388919 6390181 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0671 4 420 Miscellaneous Gene Families AT3G23000 59.670 1.69e-172 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vvi5g0671 Pkinase 4.4e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0671 K12761 - vvi:100247675 815.068