Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0670 ATGGCTTTGGAGCTCGTACCAATAGGGACCATCTTGGCTGTGTTAACGAACCAAGTCCTTAAGACAGCTCAAGCTGCAAAGGATGTTCTTATTGGGAAGGAGTGTTTCAAGGTTCTGTCCAAGCACCTCTTTGATATTGAACCCGTCTTAAAGGAATTGCAGCTTCAAAAACTGAATGATTCTCAAGCTGCAAAGCAAGCTCTAGAAAACCTAGAAGAAGATGTCAAGAAAGCTAACAACTTGGTAGAGAGGTACAAAAACTGTGCCCGTTTCTACTTGCTGTTCAAATGCCGGCACATTGTCAAGGAGGTCGAAGAAGTCACAAGGGATATTGGAAGGTCTTTGGCTGCTTTATCCCTTGCAAACACTGAAGTCCTGGCAGGGATATCTGACCAGGTGAACAGGTTACAGAATGAGATGCAAAGAGTGGAATTTGAGGCCTCACAATCTCAGATCAAAATTGTTGACAAGTTGAATCAGGGTATCAATGATGCAAAACTTGACCAGGATTTTGCAAATGACATGCTTGAAGAGATAGCAATGGCAGTTGGGGTACCGGTTGAGCCGTCAGAGATAAGCAAAGAGCTAAAAAACCTCAGAAAGGAAAAGGAAGAAACTGCCAACCGGAAAGAAAGGGCAGAAGCTTTCTTCCTGGAGCAGGTTATCGAGCTGCTTTCTCGAGCAGATGCTGCAAAAGATTTTGAGCAAGTTAAAGAGCATTATGTTCAGAGGGCTCAGGTCATAGAGCGTTATGATTGCAGCAGAGAGGATATTACACCACTAAAGACTTTCATTTGTCCTATAAGTCAAACTGTGATGGTTGATCCTGTCAACCTTTGCACTGACACCACATGTGAGAGGGCAGCTATCAAAGCCTGGTTTGACCGTGGAGAGAAGACTGATCCAGAAACGGGTGATCTTCTGGGAGATTTTACTTTGAGGCCTAACCTTCGACTAAGACAATCAATTGAAGAGTGGAGGGAAATCAATTACTGCCTTAAAATCAGATCTTCCAAGGAAAAGCTGCTATCAGGTGTAGACCTCTCTGTGGAAGCAGCCCTCATCCAAATGCAGGATCTTATGAGAGAGAATTCCATTAACAAAGACTGGATTACCATAGGAGGGCTTACTGCTATTATTGTTTCTATCCTTGGAAGCTCCCACAACAAAGATGTGAAGAGAAATATTTTAATTACCTTAAAGTATGTTGTAGAAGGACATGCAAGAAATAAGGAAAAAGTGGTTGAGTTCAAGGGGTTGGATCACATCATTCCCTGCTTAGGGCGTGACTCAAGCATATCAAAGGCTGCAGTTGAATTGTTATATGAGTTATTGCAAGATAAATCTGGTTGGAACGTGTCTGTTTGTAGGAAACTCTCACAGACATGTAGTGCAATTCTTTTCCTTGTAACCCTCCTGAAAGGTCCAGTCAAGGAGTCAGCGGAGAAAGCTGAAAAAATCTTAATGAAGCTTTGTGATGAAGATGAGGAGAACATTTCTCGTGCTGCTAGGGCAGACTGGTATAAGCCACTTATTGATCGCATTATTCGAGGCTCTGAGACTTCAAGGATATCAAAGGTGAGAACACTTGTTAATATGGAACTTGTTGACCAGAATATAACGCTCCTTGGCAAGGAAGGGGTAATACCTCCCTTGCTTGAAATGGCATCTGGCAATGTGGAATCACAAGAAGCATCCTTATCTGCACTGGTTAAGCTATCAGGTTGTCATGCCAACAAAGAGCTCATTGCCGCTGCTGGTGGGGTTCCTATTATTGTGGACTTAATATTCTCTCCCCACACTGCAATAATCATTGCTAGATGTTGTGAAGTCTTGGAGAAACTTACTTCAAATGATGATGGAATTAAATTCCTTGTTGACAAAAATAAGAAGCAACTTGAGATAGAGCAGATAATAAAGAAGTTGTTAGCATTTTTACAAAGTCCAAACTCATCCAACATCATGCTGAGGCCTGCTTTACGTGCACTTCTCGGGATTTGTAAGTCTGAAGCAAGGTTTATTAAGACAGCAGTTCTTACTGCCAATGGTGTTTCCCTCATCCTTCCTCTTCTTGATGGCTCTGACCCAGAAATTAGAGAAATTGCCATAAATCTTCTGTCCCTCTTCTCTCAGCATGAACCAGAAGGCGTTGTGGAATATCTTCTCAAGCCAAAGAGGTTGGAGGCTTTAGTGGGGTTTCTTGAGAATGGTGATAAGGCTGATGTACAGATGGCAGCAGCTGGTTTATTGGCCAATCTTCCAAAATCAGAAGTACCACTCACAATGAAGTTAATCGAATTAGAAGGGTTGAATGCAATCATAAGCATCTTAAGATCTGGGACCATGGGAGCAAAAGAAAATGCTCTAACTGCACTCTTCAGGTTCACGGATCCTGCAAATCTAGACTCGCAGCGAAAGGTGGTTGAACTAGGAGCATATCCTTTGCTTGTAAGATTTCTCAGGGTTGGTTCGGAAACAGCAAAGGCAAGAGCAGCAGCCCTCATTGGTAATCTTTCCACAAGCAGTCTAGAACTTGCAGTTGTGCCTAAACCAGCTAGATGCTTGTGTTTCAGGTCATCACGCGTCCCTTTGTGCCCTGCACATGGAGGTATCTGCAGTGTGGAGACAACTTTTTGTCTATTGAAGGCAGATGCTTTGGCTGGGCTGGTAGCACTCTTGCATGAAGAGATTGATGCAACTGCTTATGAAGCAATTCAGACCCTTTCTACACTGGTGCGGGAAGACTCTCCTCAGAGAGGGGCCAATGTCTTGCATGAAGCTGATGCCATTAATCCCACACTGGAGATTTTGAATTGGGGACCGGGTCCTCTGAAGGAACAGGCTTTGGTACTATTGGAGAAAGTCCTTACAGTGAAGGAAATGGTGGAAAAGTATGGATCAATAGCTCGGTTACGTCTTGTCGATATTACTGGTAGGATTAACATTCATGAGGATGGGAATCTTAGGAGGAAGGCTGCTGGAGTCTTAGCTCTCCTCGAACGCTATTCGGGATTTGATACATCATCTCTTGCTACAGGACTCAATGGGTGA 3051 0.434 MALELVPIGTILAVLTNQVLKTAQAAKDVLIGKECFKVLSKHLFDIEPVLKELQLQKLNDSQAAKQALENLEEDVKKANNLVERYKNCARFYLLFKCRHIVKEVEEVTRDIGRSLAALSLANTEVLAGISDQVNRLQNEMQRVEFEASQSQIKIVDKLNQGINDAKLDQDFANDMLEEIAMAVGVPVEPSEISKELKNLRKEKEETANRKERAEAFFLEQVIELLSRADAAKDFEQVKEHYVQRAQVIERYDCSREDITPLKTFICPISQTVMVDPVNLCTDTTCERAAIKAWFDRGEKTDPETGDLLGDFTLRPNLRLRQSIEEWREINYCLKIRSSKEKLLSGVDLSVEAALIQMQDLMRENSINKDWITIGGLTAIIVSILGSSHNKDVKRNILITLKYVVEGHARNKEKVVEFKGLDHIIPCLGRDSSISKAAVELLYELLQDKSGWNVSVCRKLSQTCSAILFLVTLLKGPVKESAEKAEKILMKLCDEDEENISRAARADWYKPLIDRIIRGSETSRISKVRTLVNMELVDQNITLLGKEGVIPPLLEMASGNVESQEASLSALVKLSGCHANKELIAAAGGVPIIVDLIFSPHTAIIIARCCEVLEKLTSNDDGIKFLVDKNKKQLEIEQIIKKLLAFLQSPNSSNIMLRPALRALLGICKSEARFIKTAVLTANGVSLILPLLDGSDPEIREIAINLLSLFSQHEPEGVVEYLLKPKRLEALVGFLENGDKADVQMAAAGLLANLPKSEVPLTMKLIELEGLNAIISILRSGTMGAKENALTALFRFTDPANLDSQRKVVELGAYPLLVRFLRVGSETAKARAAALIGNLSTSSLELAVVPKPARCLCFRSSRVPLCPAHGGICSVETTFCLLKADALAGLVALLHEEIDATAYEAIQTLSTLVREDSPQRGANVLHEADAINPTLEILNWGPGPLKEQALVLLEKVLTVKEMVEKYGSIARLRLVDITGRINIHEDGNLRRKAAGVLALLERYSGFDTSSLATGLNG* 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0670 1016 SMART Ubox_2 263 326 IPR003613 GO:0004842|GO:0016567
Vvi5g0670 1016 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 333 IPR013083 -
Vvi5g0670 1016 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 10 1005 - -
Vvi5g0670 1016 CDD MLKL_NTD 9 144 - -
Vvi5g0670 1016 Gene3D - 864 1002 IPR011989 -
Vvi5g0670 1016 Gene3D - 6 122 IPR036537 GO:0007166
Vvi5g0670 1016 Pfam U-box domain 264 328 IPR003613 GO:0004842|GO:0016567
Vvi5g0670 1016 SUPERFAMILY ARM repeat 468 840 IPR016024 -
Vvi5g0670 1016 Gene3D - 338 533 IPR011989 -
Vvi5g0670 1016 ProSiteProfiles U-box domain profile. 259 333 IPR003613 GO:0004842|GO:0016567
Vvi5g0670 1016 SUPERFAMILY RING/U-box 246 330 - -
Vvi5g0670 1016 Coils Coil 193 216 - -
Vvi5g0670 1016 Gene3D - 534 862 IPR011989 -
Vvi5g0670 1016 Coils Coil 126 153 - -
Vvi5g0670 1016 Coils Coil 58 88 - -
Vvi5g0670 1016 SMART arm_5 407 446 IPR000225 GO:0005515
Vvi5g0670 1016 SMART arm_5 536 575 IPR000225 GO:0005515
Vvi5g0670 1016 SMART arm_5 576 617 IPR000225 GO:0005515
Vvi5g0670 1016 SMART arm_5 671 711 IPR000225 GO:0005515
Vvi5g0670 1016 SMART arm_5 800 840 IPR000225 GO:0005515
Vvi5g0670 1016 SMART arm_5 626 668 IPR000225 GO:0005515
Vvi5g0670 1016 SMART arm_5 873 913 IPR000225 GO:0005515
Vvi5g0670 1016 SMART arm_5 713 755 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0670 Vvi-Chr5 6369991 6376906 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0670 262 966 U-box Gene Family AT1G76390 28.229 3.25e-43 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0670 - - vvi:100252782 1930.99