Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0651 ATGTCCAGTATTTTGCATGTTAACTTAAATTGCATAGAGTCCATACTCGATGTGCCAAGCACCCTTAGCAAACCCAACAAGCGATGGCACTTAGCCTTTGCTACTATCTATTGTGCCAGGGTTTTACATTCTCTTCTCAATGAGAAGAAGAATAGCAGCAAACTTCCAGTTGCTACTCCTTCCTTTGTTGTCCTCAATGTTAAGCCCGATGCCTTCTCAAGCATTGATCAGACAACTCTCACTGAAATTGTGAAGGAGAAAAACTTAAAACTGCTTCTTGAATCTGGAGGAGTTGAAGGCGTGGCTGATGCTCTAGAAACAGATATCAAAAATGGCATCAGTGGTGCTGTTGACGATGTTGCTCTCAGACAGGAAGCTTTCGGTTCAAACACATACAAGAGGCCGCCCACTAAAAGCTTATTCCACTTCGTGGTGGAAGCTTTTAAGGATCTTACCATTCTCATACTTCTATTTTGTGCCGCGCTGTCTCTCGGTTTTGGAATTAAAGAGCATGGGCTGAAGGAAGGGTGGTATGATGGTGGAAGCATATTTGTAGCCGTCATTCTAGTCATTTCTGTCTCTGCTGTGAGCAACTTCAGGCAAAACAGACAGTTCGAAAAGTTGTCTAAAGTCAGCAACAATATCAAAATTGATGTTTTCAGAAATGGGCGCCGTCAGCAGATCTCTATATTTGAAATAGTCGTTGGAGATGTTGTTAGCTTAAAAATCGGTGACCAAGTTCCTGCCGATGGGTTGTTCTTGGATGGGCATTCACTACAAGTGGATGAATCCAGCATGACTGGGGAGAGTGACCATGTTGAAGTTAATAGCAGCCATAATCCATTTTTGTTTTCTGGAACCAAAGTGGCAGATGGATATGCTCAAATGCTTGTGACATCTGTTGGTATGAACACAACATGGGGCCAGATGATGAGCACAATCAGCCGCGACACTAATGAACAAACACCATTACAAGCCAGGCTCAACAAACTTACCTCATCAATAGGTAAGGCTGGTTTGGCAGTTGCTTTTCTAGTTCTTTTAGTGTTGTTGGTTCGCTATTTCACTGGGAATACAGAAGATGAGAATGGAAATCAGGAGTTCAATGGCAGCAAAACAAAGGCTGATGATATAGTGAATGCTGTGGTCGAAATCATTGCTACTGCAGTTACCATTGTGGTTGTTGCAATTCCGGAAGGCCTGCCATTGGCTGTCACACTCACTCTTGCTTATTCAATGAAGAGAATGATGGCTGACCAGGCTATGGTTCGAAAGCTCTCTGCCTGTGAGACCATGGGCTCTGCCACCACAATTTGTACTGACAAAACAGGTACTCTCACTATGAACCAGATGAAGGTGACAAAGATTTGGCTTGGCCAAGAACCTATTGAAGTTTCCTCTTCAATTTCAGAAAATCTTCTTAACCTTATCCAACAAGGAGTTGCTTTGAACACAACTGGTAGCGTTTACAGGGCTACCTCAGGATCTTATAAGTTCGAGTTCTTTGGTAGTCCAACTGAAAAAGCAATTCTTTCATGGGCTGTACTGGAACTTGATATGGACATGGAGATACTGAAGCAGAATTGTACAATTCTCCATGTTGAAGCCTTCAATTCGGAGAAGAAAAGAAGTGGGGTTTCAATAAGGAGTAAGGCTGATAACACAATCCACGTGCACTGGAAGGGAGCTGCAGAGATGATACTAGCAATGTGTTCGAGTTATTATGATGCTTCTGGAAGCATGAAAGATCTGGATGATTGTGAACGAAAGACATTTGAGCAAATAATTCAAGGTATGGCTGCTAGCAGCCTCCGCTGCATTGCTTTTGCACATAAACAGATTCTAGAGGAAGAACATGAAATTAGAGAAGCCACCCAAAAGCTAAAAGAAGATGGCTTGGCCTTTGTAGGACTGGTAGGGATTAAGGACCCATGTAGACCAGGGGTGAGAAAAGCTGTGGAAGATTGCCAACATGCGGGAGTGAATGTGAAAATGATCACTGGTGATAATGTTTTCACTGCAAGAGCCATAGCCACTGAATGTGGAATACTAAGACCTGATCAAGGCATAAACAATGAGGCAGTGGTAGAAGGTGAGGTATTTCGGAATTACACCCCAGAAGAGAGAATGGAGAAAGTTGACAAAATTCGTGTGATGGCTAGATCCTCTCCCTTTGATAAACTTCTTATGGTACAGTGCTTGAAACAGAATGGTCATGTGGTTGCAGTCACAGGTGATGGCACAAATGATGCACCAGCATTAAAAGAAGCCGACATAGGACTTTCTATGGGGATACAGGGCACTGAAGTGGCCAAAGAGAGCTCAGATATCATCATCTTGGATGATAATTTTGCTTCGGTAGCAACAGTTTTGAGGTGGGGAAGGTGTGTTTATAACAACATTCAGAAATTCATCCAGTTCCAGCTTACAGTGAATGTTGCAGCTCTTGTAATCAACTTTGTAGCAGCAGTTTCAGCTGGTGAGGTCCCCTTAACAGCAGTGCAATTATTGTGGGTAAACTTGATCATGGATACACTAGGTGCACTTGCTCTCGCCACAGAGCAACCCACCAATGAGCTCATGGATAGACCACCTGTGGGTCGGACGGGGCCACTTATCACCAACATCATGTGGAGGAATTTACTAGCCCAAGCAATGTATCAGATAGCTGTCCTCTTGACCTTACAATTCAAAGGAGAATCAATCTTTGGTGTGAGCGAGAAGGTAAAGGACACCTTGATATTCAATACTTTCGTACTGTGCCAGGTCTTCAATGAATTCAATGCAAGGAGGCTTGAGAAAAAGAATGTGTTTGAAGGGATACATAAAAACAAGTTGTTTTTGGGGATCATTGGGATAACCATTATCCTTCAAGTGGTTATGGTGGAATTTTTGAAGAAATTTGCAGATACGGAGAGGTTGAATTGGGGACAATGGGGTGCCTGCCTTGGAATTGCAGCAGTATCTTGGCCACTTGGTTGGGTTGTCAAGTGCATACCTGTCTCAAATAAACCATTTCTCAGCTATCTAAGGTGGTAG 3039 0.4307 MSSILHVNLNCIESILDVPSTLSKPNKRWHLAFATIYCARVLHSLLNEKKNSSKLPVATPSFVVLNVKPDAFSSIDQTTLTEIVKEKNLKLLLESGGVEGVADALETDIKNGISGAVDDVALRQEAFGSNTYKRPPTKSLFHFVVEAFKDLTILILLFCAALSLGFGIKEHGLKEGWYDGGSIFVAVILVISVSAVSNFRQNRQFEKLSKVSNNIKIDVFRNGRRQQISIFEIVVGDVVSLKIGDQVPADGLFLDGHSLQVDESSMTGESDHVEVNSSHNPFLFSGTKVADGYAQMLVTSVGMNTTWGQMMSTISRDTNEQTPLQARLNKLTSSIGKAGLAVAFLVLLVLLVRYFTGNTEDENGNQEFNGSKTKADDIVNAVVEIIATAVTIVVVAIPEGLPLAVTLTLAYSMKRMMADQAMVRKLSACETMGSATTICTDKTGTLTMNQMKVTKIWLGQEPIEVSSSISENLLNLIQQGVALNTTGSVYRATSGSYKFEFFGSPTEKAILSWAVLELDMDMEILKQNCTILHVEAFNSEKKRSGVSIRSKADNTIHVHWKGAAEMILAMCSSYYDASGSMKDLDDCERKTFEQIIQGMAASSLRCIAFAHKQILEEEHEIREATQKLKEDGLAFVGLVGIKDPCRPGVRKAVEDCQHAGVNVKMITGDNVFTARAIATECGILRPDQGINNEAVVEGEVFRNYTPEERMEKVDKIRVMARSSPFDKLLMVQCLKQNGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIIILDDNFASVATVLRWGRCVYNNIQKFIQFQLTVNVAALVINFVAAVSAGEVPLTAVQLLWVNLIMDTLGALALATEQPTNELMDRPPVGRTGPLITNIMWRNLLAQAMYQIAVLLTLQFKGESIFGVSEKVKDTLIFNTFVLCQVFNEFNARRLEKKNVFEGIHKNKLFLGIIGITIILQVVMVEFLKKFADTERLNWGQWGACLGIAAVSWPLGWVVKCIPVSNKPFLSYLRW* 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0651 1012 FunFam Calcium-transporting ATPase 192 315 - -
Vvi5g0651 1012 Gene3D - 146 997 - -
Vvi5g0651 1012 Pfam Cation transporter/ATPase, N-terminus 95 163 IPR004014 -
Vvi5g0651 1012 SUPERFAMILY Calcium ATPase, transduction domain A 215 313 IPR008250 -
Vvi5g0651 1012 PRINTS P-type cation-transporting ATPase superfamily signature 439 453 - -
Vvi5g0651 1012 PRINTS P-type cation-transporting ATPase superfamily signature 659 669 - -
Vvi5g0651 1012 PRINTS P-type cation-transporting ATPase superfamily signature 744 763 - -
Vvi5g0651 1012 PRINTS P-type cation-transporting ATPase superfamily signature 262 276 - -
Vvi5g0651 1012 PRINTS P-type cation-transporting ATPase superfamily signature 768 780 - -
Vvi5g0651 1012 PRINTS P-type cation-transporting ATPase superfamily signature 637 648 - -
Vvi5g0651 1012 FunFam Calcium-transporting ATPase 761 1003 - -
Vvi5g0651 1012 FunFam Calcium-transporting ATPase 638 789 - -
Vvi5g0651 1012 Pfam E1-E2 ATPase 216 417 - -
Vvi5g0651 1012 SFLD p-type atpase 421 797 IPR044492 -
Vvi5g0651 1012 SFLD C1.7: P-type atpase like 421 797 - -
Vvi5g0651 1012 SUPERFAMILY Calcium ATPase, transmembrane domain M 95 1002 IPR023298 -
Vvi5g0651 1012 Pfam Cation transporting ATPase, C-terminus 829 998 IPR006068 -
Vvi5g0651 1012 PRINTS H+-transporting ATPase (proton pump) signature 592 610 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi5g0651 1012 PRINTS H+-transporting ATPase (proton pump) signature 744 760 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi5g0651 1012 PRINTS H+-transporting ATPase (proton pump) signature 776 801 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi5g0651 1012 Gene3D - 119 315 - -
Vvi5g0651 1012 PANTHER CATION TRANSPORTING ATPASE 59 1002 - -
Vvi5g0651 1012 Gene3D - 436 789 IPR023214 -
Vvi5g0651 1012 NCBIfam calcium-translocating P-type ATPase, PMCA-type 73 1001 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vvi5g0651 1012 Gene3D - 449 644 IPR023299 GO:0000166
Vvi5g0651 1012 SUPERFAMILY HAD-like 437 849 IPR036412 -
Vvi5g0651 1012 SMART Cation_ATPase_N_a_2 92 168 IPR004014 -
Vvi5g0651 1012 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 446 641 IPR023299 GO:0000166
Vvi5g0651 1012 ProSitePatterns E1-E2 ATPases phosphorylation site. 441 447 IPR018303 -
Vvi5g0651 1012 Pfam haloacid dehalogenase-like hydrolase 436 758 - -
Vvi5g0651 1012 CDD P-type_ATPase_Ca_PMCA-like 120 877 - -
Vvi5g0651 1012 FunFam Calcium-transporting ATPase 449 644 - -
Vvi5g0651 1012 Coils Coil 607 627 - -
Vvi5g0651 1012 NCBIfam HAD-IC family P-type ATPase 381 487 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi5g0651 1012 NCBIfam HAD-IC family P-type ATPase 715 825 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi5g0651 1012 NCBIfam HAD-IC family P-type ATPase 183 355 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0651 Vvi-Chr5 6140865 6143903 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0651 12 1012 Primary Pumps ATPases AT3G22910 70.862 0.0 1383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0651 K01537 - vvi:100264868 1929.07