Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0649 ATGGAAGCTATGTTTGCGTTTGTGTCTGATAGTTTGTCTTTGTTTTCATCCCATCATCGTTACATAGCCTTTTGTCTGTCCCGAAGCATGTCTGACAATTTGCATGTTAACTTGAATTGCAAAGAGCCCAAACTCGATGTGCCAACCACCCACAGCAAACCCAACAAGAGATGGCGCTTGGCCTTTGCTACTATCTATTGTGCCAGGGTTTTACATTCTCTTCTCAATGAGAAGAAGAATGGCAGCAAACTTCCAGTTGCTGCTCCTTCCTTTGATGTCTTCAATGTTAAGCCCGATGCCTTCTCAAGAATTGATCAGACAACTCTCACTGAAATTGTGAAGGAGAAAAACGTAGACCTGCTTCTTGAATTTGGAGGAGTTGAAAGCGTGGCTGATGCTCTAGAAACAGATATCAAAAATGGCATCAGCGGCGCTGTTGACGATGTTGCTCTCAGACAGGAAGCTTTCGGTTCAAACACATATAAGAGGCCACCTGCTAAAAGCTTATTCCACTTCGTGGTGGAAGCTTTTAAGGACCTCACCGTTTTCATACTTCTATTTTGTGCAACACTGTCTCTCGGTTTTGGAATTAAAGAGCATGGGCTGAAGGAAGGGTGGTATGATGGTGGAAGCATATTTGTAGCCGTCATTCTAGTCGTTTCTGTCTCTGCTGTGAGTAACTTCAGGCAAAACAGACAGTTCGAAAAGTTGTCTAAAGTAAGCAACAATATCAAAGTTGATGTTTTCAGAAATGGGCGCCGTCAGCAGATCTCTATATTTGAAATAGTCGTTGGAGATGTTGTTGGCTTAAAAATTGGTGACCAAGTTCCTGCCGATGGGTTGTTCTTGGATGGGCATTCACTACAAGTGGATGAATCCAGCATGACCGGGGAGAGTGACCATGTTGAAGTTAATAGCAGCCATAATCCATTTTTGTTTTCTGGAACCAAAGTGGCTGATGGATATGCTCAAATGCTTGTGACATCTGTTGGTATGAACACAACATGGGGCCAGATGATGAGCACAATCAGCCGCGACACTAATGAGCAAACACCCTTACAAGCCAGGCTTAACAAACTTACATCATCAATAGGTAAGGTTGGTATGGCAGTTGCCTTTCTAGTGCTCGTAGTGTCGTTAGTTCGCTATTTCACTGGCAACACAGAAGATGAGAATGGAAATCGGGAGTTCATTGGCAGCAACATAAAGGCTGTTGATATGGTGCATTCTATGGTAACAATCATTGCGGCCGCATTTACCATTCTGGCTGTGGCAATTCCAAAAGGCTTGTTGTTGGCTGTCACACTCATTCTTACTTATTCAATGAAGAGAATGATGGCTGACCAGGCTATGGTTCGGAAGCTCTCTGCCTGTGAGACCATGGGCTCTGCCACCACCATTTGTACCGGCAAAACAGGTACTCTGACTTTGAACCAGATGAAGGTGACAAAGATTTGGCTTGGCCAAGAACCTATTGAGGTTTCCTCTTCAATTTCAACAAATCTTCTCAACCTCATCCAACAAGGGGTTGCCCTGAACACAACTGGTAGCGTTTACAAGGCTAGTTCGGGATCTTCTAAGTTCGAGTTCTCCGGTAGTCCAACTGAAAAAGCAATTCTTTCATGGGCTGTGCTGGAACTTGACATGGACATGGAGATATTGAAGCAGAATTGTACCATTCTCCATGTTGAAGCCTTCAATTCGGAGAAGAAAAGAAGTGGGGTTTCAATAAGGAGTAAGGCTGATAACACAATCCATGTGCACTGGAAGGGAGCAGCAGAGATGATACTAGCAATGTGTTCGAGGTACTATGATGCTTCTGGAAGCATGAAAGATATGGATGATGATGAAAGGATGATATTCGAGCAAATAATTCAAGGTATGGCGGCTAGCAGCCTTCGCTGCATTGCTTTTGCACATACACAGATTCCAGGGGAGGAGCATGAAATTGGTGTAGGTCTGCAAAATCTGAAAGAACACAGCTTGACCCTTATAGGACTGGTAGGGATAAAGGACCCATGTAGACCAGGAGTGAGAAAGGCTGTGGAAGACTGCCAATGCGCTGGAGTGAACGTCAAAATGATTACCGGTGATAATGTATTCACTGCAAGAGCCATGGCCACTGAATGCGGAATACTAAGGCCTGATCAAGACATGACCAGTGAAGGTAGAAGGTGA 2178 0.4426 MEAMFAFVSDSLSLFSSHHRYIAFCLSRSMSDNLHVNLNCKEPKLDVPTTHSKPNKRWRLAFATIYCARVLHSLLNEKKNGSKLPVAAPSFDVFNVKPDAFSRIDQTTLTEIVKEKNVDLLLEFGGVESVADALETDIKNGISGAVDDVALRQEAFGSNTYKRPPAKSLFHFVVEAFKDLTVFILLFCATLSLGFGIKEHGLKEGWYDGGSIFVAVILVVSVSAVSNFRQNRQFEKLSKVSNNIKVDVFRNGRRQQISIFEIVVGDVVGLKIGDQVPADGLFLDGHSLQVDESSMTGESDHVEVNSSHNPFLFSGTKVADGYAQMLVTSVGMNTTWGQMMSTISRDTNEQTPLQARLNKLTSSIGKVGMAVAFLVLVVSLVRYFTGNTEDENGNREFIGSNIKAVDMVHSMVTIIAAAFTILAVAIPKGLLLAVTLILTYSMKRMMADQAMVRKLSACETMGSATTICTGKTGTLTLNQMKVTKIWLGQEPIEVSSSISTNLLNLIQQGVALNTTGSVYKASSGSSKFEFSGSPTEKAILSWAVLELDMDMEILKQNCTILHVEAFNSEKKRSGVSIRSKADNTIHVHWKGAAEMILAMCSRYYDASGSMKDMDDDERMIFEQIIQGMAASSLRCIAFAHTQIPGEEHEIGVGLQNLKEHSLTLIGLVGIKDPCRPGVRKAVEDCQCAGVNVKMITGDNVFTARAMATECGILRPDQDMTSEGRR* 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0649 725 Gene3D - 175 464 - -
Vvi5g0649 725 NCBIfam HAD-IC family P-type ATPase 212 384 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi5g0649 725 NCBIfam HAD-IC family P-type ATPase 406 521 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi5g0649 725 PANTHER CATION TRANSPORTING ATPASE 88 723 - -
Vvi5g0649 725 NCBIfam calcium-translocating P-type ATPase, PMCA-type 102 717 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vvi5g0649 725 Pfam Cation transporter/ATPase, N-terminus 125 192 IPR004014 -
Vvi5g0649 725 SUPERFAMILY HAD-like 660 714 IPR036412 -
Vvi5g0649 725 FunFam Calcium-transporting ATPase 221 344 - -
Vvi5g0649 725 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 474 678 IPR023299 GO:0000166
Vvi5g0649 725 Pfam Cation transport ATPase (P-type) 522 602 - -
Vvi5g0649 725 Gene3D - 465 720 IPR023214 -
Vvi5g0649 725 SMART Cation_ATPase_N_a_2 123 197 IPR004014 -
Vvi5g0649 725 Pfam E1-E2 ATPase 244 446 - -
Vvi5g0649 725 SUPERFAMILY Calcium ATPase, transmembrane domain M 124 462 IPR023298 -
Vvi5g0649 725 Gene3D - 478 673 IPR023299 GO:0000166
Vvi5g0649 725 PRINTS P-type cation-transporting ATPase superfamily signature 688 698 - -
Vvi5g0649 725 PRINTS P-type cation-transporting ATPase superfamily signature 468 482 - -
Vvi5g0649 725 PRINTS P-type cation-transporting ATPase superfamily signature 291 305 - -
Vvi5g0649 725 PRINTS P-type cation-transporting ATPase superfamily signature 666 677 - -
Vvi5g0649 725 Gene3D - 147 344 - -
Vvi5g0649 725 SUPERFAMILY Calcium ATPase, transduction domain A 243 342 IPR008250 -
Vvi5g0649 725 FunFam Calcium-transporting ATPase 478 673 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0649 Vvi-Chr5 6107263 6120453 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0649 45 722 Primary Pumps ATPases AT3G22910 63.848 0.0 809
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0649 K01537 - vvi:100264868 1180.24