Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0648 ATGGCTAGGTCCTCTCCCTTTGATAAACTTCTCATGGTACAGTGCTTGAAACAAAAAGGTCATGTCGTTGCAGTGACAGGTGATGACACAAATGATGCACCAGCATTAAAGGAAGCTCACATAGGACTTTCTATGGGAATACAGGGCACTGAAGTTGCTAAGGAGAGCTCAGATATCATCATCTTGGATGATAATTTTACTTCTGTTGCCACGGTTTTGAGGTGGGGAAGGTGTGTTTATGACAATATCCAGAAACTCATCCAGCTCCAGCTCACAATGAATGTTGCAGCCCTTGTAATCAACGTTGTAGCAGCAGTTTCAGCACGTGAAGTTCCCTTTACAGAGCTGAAATTATTGTGGGTGAACTTGATTTTGGACACGTTATGTGCTCTAACTCTTGCCACAGGGCAGCCCACCAAGGATCTCATGGAGGAGCCACCTGTGCGCCGGACTCAGCCACTTATTACCAACATAATGTGGAGGAATATATTAGGCCAAGCATTATATCAGATAGCCGTCGTCTTGACCCTACAGTTTAGTGGAGAGTCAATATTCGATGTTAATGAGAAGGTAAAGGATACCTTGATCCTCAATACTTCAGTGTTATGCCAGGTTTTCAATCAATTCAATGCAAGGAAGCTGGAGAAAAAGAATGTGTTCGAGGGGATGCATAAAAACAAGTTGTTTTGGGGGATAATTGGGATAACCATTATACTTGAGGTGGTTGTGGTAGAATTTTTGAAGAAATTTGCCGATACAGAGAGGTTAAGAAAAATGGCTATGATGGGTTGGATGGAGAGAGAGAGGAGAAATAGGGAAAGAAGGAAACAAGCGAAGGGAGAAAGGGTTGAAGTCGACCGAAGAAGGGGGGACGGAGTGGCCGACAGCAACGTCGCCAGCGATGGGTCGATGGTGATGGGTGTGCGGGTGGAAGAGAAGGAAGAAATGCAGTTTTAA 957 0.4451 MARSSPFDKLLMVQCLKQKGHVVAVTGDDTNDAPALKEAHIGLSMGIQGTEVAKESSDIIILDDNFTSVATVLRWGRCVYDNIQKLIQLQLTMNVAALVINVVAAVSAREVPFTELKLLWVNLILDTLCALTLATGQPTKDLMEEPPVRRTQPLITNIMWRNILGQALYQIAVVLTLQFSGESIFDVNEKVKDTLILNTSVLCQVFNQFNARKLEKKNVFEGMHKNKLFWGIIGITIILEVVVVEFLKKFADTERLRKMAMMGWMERERRNRERRKQAKGERVEVDRRRGDGVADSNVASDGSMVMGVRVEEKEEMQF* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0648 318 Gene3D - 34 265 - -
Vvi5g0648 318 MobiDBLite consensus disorder prediction 268 299 - -
Vvi5g0648 318 MobiDBLite consensus disorder prediction 268 294 - -
Vvi5g0648 318 SUPERFAMILY Calcium ATPase, transmembrane domain M 76 256 IPR023298 -
Vvi5g0648 318 PRINTS P-type cation-transporting ATPase superfamily signature 26 45 - -
Vvi5g0648 318 PRINTS P-type cation-transporting ATPase superfamily signature 50 62 - -
Vvi5g0648 318 Pfam Cation transporting ATPase, C-terminus 111 256 IPR006068 -
Vvi5g0648 318 PRINTS H+-transporting ATPase (proton pump) signature 58 83 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi5g0648 318 PRINTS H+-transporting ATPase (proton pump) signature 26 42 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi5g0648 318 SUPERFAMILY HAD-like 2 84 IPR036412 -
Vvi5g0648 318 PANTHER CATION TRANSPORTING ATPASE 1 257 - -
Vvi5g0648 318 FunFam Calcium-transporting ATPase 43 265 - -
Vvi5g0648 318 NCBIfam HAD-IC family P-type ATPase 1 106 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0648 Vvi-Chr5 6104459 6107204 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0648 1 264 Primary Pumps ATPases AT3G63380 73.864 2.73e-133 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0648 K01537 - vvi:100261329 471.855