Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0644 ATGGATATATTGCACTCTTTTTTCCTTCGTCCAAGTTTTGTCCCACTAGATTTTACTGGCAAGTCATTTGCTGAATCTGCAGTAAATATTTCAGAAAAAACAGGCAATTGTCCAACTCAGAAATCTGGGTTGATGTTGTCTGAAATTGAGTCCATACTCGATGTGCCAGCCACCCTTGGCAGACACAACAAGAGATGGCACTTGGCCTTTGCTACAATCTATTGTTCCAGGGCCCTACATTCTCTTCTCAACAAGAAGAAGAGCAGCAAACCCCCGGTTTCTACTCATTCCTTTGTTGTCCTCAGTGTTGAGCCCCACCTTGCCTTCCCAAACATTGATCACACAAGTCTCACTGCAGTAGTGAAAGAGAAAAACTTAGATCAACTTCGCAAATTGGGAGGAGTTGAAGGTGTGGCTGATGCTCTAAAAACAGATACCAAAAGTGGCATCCATGGTGCTGTTGAAGATGTAGCTGAAAGGCAGGAAACGTTCGGTTCAAACACATACCCGAGGCCGCCTACTAAAAGTTTCTTCTACTTTGTGTTGGAAGCTTTTAAGGATCTTACCATTCTCATACTTCTAGCTTGTGCCACACTCTCCCTCGGTTTCGGAATTAAAGAGCACGGGCCGAAGGAAGGGTGGTATGATGGTGGAAGCATATTCGTTGCTGTCTTTCTAGTCATTTCTGTCTCTGCTGTGAGCAACTTCAGGCAAAACCGACAGTTCGAAAAGTTGTCTAAAGTCAGCAACAACATCGAGGTTGAAGTCGTTCGAGGTGGGCATCGTCAGAAGATTTCTATATTTGATATCGTTGTTGGAGATGTGGCTTGCTTAAAAATTGGTGACCAAGTTCCGGCTGATGGATTATTCTTGGCCGGGCATTCACTACAAGTGGATGAATCCAGCATGACCGGGGAGAGCGACCATGTAGAGATTAATAGCAGCCAGAATCCATTTTTGTTTTCTGGAACCAAAGTGGCTGATGGATATGCCCAGATGCTTGTGACTTCTGTTGGTATGAACACAACATGGGGGGAGATGATGAGCACAATCAGCCGCGACAATAATGAACAGACACCCCTACAAGCCCGTCTTAACAAGCTAACTTCATCGATAGGTAAGGTTGGTTTGGCTGTTGCTTTTCTAGTTCTTCTCGTGTTGGTGGTTCGCTACTTCACAGGGAATACAGAAGATGAGAACGGAAATCAGGAGTTCAATGGCAGCAAGACAAAGGCTGATGATATAGTGAATGCCATGGTCAGAATCATTGCTGCAGCAGTTACCATTGTCGTTGTGGCAATTCCAGAAGGGTTGCCTTTGGCCGTCACACTCACCCTTGCTTATTCAATGAAGAGAATGATGGCTGACCAGGCTATGGTTCGAAAGCTCTCCGCCTGTGAGACCATGGGCTCTGCAACTACAATTTGTACTGATAAAACAGGTACCCTCACTCTGAACCAGATGAAGGTGACAAAGTATTGGCTTGGAAAAGAACCTGTTGAAGATTCCTCTTCAATTGCGACAAACGTTCTCAAGCTGATTCAACAAGGAGTGGCCTTGAACACAACTGGTAGCATTTACAGGGCCACTTCAAAATCTGAATTTGAGTTCTCTGGTAGTCCCACAGAAAAAGCCTTACTTTCTTGGGCTGTTCTGGAACTTGACATGGACATGGAGAGACTAAAGCAGAATTATACCATTCTTCATGTAGAAGCCTTCAATTCAGAGAAGAAAAGAAGCGGAATTTTGATGAGGAAGAAGGCTGACAACAAAATACATGTGCACTGGAAGGGAGCAGCAGAGATGATATTAGCAATGTGTTCAAGTTACTATGATGCTTCTGGAAGCATGAAAGAACTGGATGATGGTGAAAGGATGACATTTGAGCAAATAATTCAAGGTATGGCCGCCAGCAGCCTCCGTTGCATTGCTTTTGCACATAAACAAATTCCAGAGGAAGAACAAGAAATTAGGGAAGGCCGGCAAAAGCTAAAAGAAGACAGCTTGACCCTCATTGGCCTTGTGGGGATAAAGGACCCATGTAGACCAGGGGTGAGAAAAGCTGTGGAGGATTGCCAATACGCTGGAGTGAATGTCAAAATGATTACTGGCGATAATGTCTTCACTGCAAGAGCAATAGCCACTGAATGTGGAATACTGAGACCCGATCAAGACATAAACAGTGAAGCAGTAGTAGAAGGTGAGGTATTTCGGAAGTACACCTCAGAGGAGAGGATGGAGAAAGTTGATAAAATCTGTGTGATGGCTAGATCCTCTCCCTTTGATAAACTTCTCATGGTTCAGTGCCTGAAACAGAAAGGCCATGTGGTTGCAGTGACAGGTGATGGCACAAATGATGCACCAGCATTAAAAGAAGCTGACATAGGCCTTTCCATGGGGATTCAGGGCACGGAAGTTGCAAAGGAGAGTTCAGATATCATCATCTTGGATGATAATTTTGCTTCAGTGGCAACAGTTTTGAGATGGGGAAGATGTGTTTATGACAACATCCAGAAATTCATCCAGTTTCAGCTGACGGTGAATGTTGCAGCCCTTGTAATCAACTTTGTGGCAGCAGTTTCAGCTGGTGAGGTCCCATTAACAGCAGTGCAGTTATTGTGGGTTAACTTGATCATGGACACATTAGGTGCCCTGGCCCTTGCCACAGAGCAACCCACCAAGGAGCTAATGGAGAAACCACCCGTGGGTCGGAAGGAACCACTTATCTCCAACGTCATGTGGCGGAATCTATTAGCCCAAGCTTTGTATCAGATAGCCATCCTCTTGACCCTACAGTTCAAAGGACAATCAATCTTTGGGGTGAGCGAGAAGGTAAAGGATACCTTGATATTCAATACTTTTGTGCTTTGCCAAGTCTTCAATGAATTCAATGCAAGGAAGCTGGAGAAGAAGAACGTGTTTAAGGGGTTACATAAGAACAAGCTATTTCTGGGGATAATTGGGATAACCATTATCCTTCAGGTGGTTATGGTGGAGTTTTTGAAGAAATTTGCAGATACAGAGAGGTTGGATTGGGGACAATGGGGTGCATGCATTGGAATTGCTGCAGCATCTTGGCCAATCGGTTGGGTTGTCAAGTGCATACCTGTTTCAGATAAACCATTCCTAAGCTATCTAAAGTGGTAG 3147 0.4452 MDILHSFFLRPSFVPLDFTGKSFAESAVNISEKTGNCPTQKSGLMLSEIESILDVPATLGRHNKRWHLAFATIYCSRALHSLLNKKKSSKPPVSTHSFVVLSVEPHLAFPNIDHTSLTAVVKEKNLDQLRKLGGVEGVADALKTDTKSGIHGAVEDVAERQETFGSNTYPRPPTKSFFYFVLEAFKDLTILILLACATLSLGFGIKEHGPKEGWYDGGSIFVAVFLVISVSAVSNFRQNRQFEKLSKVSNNIEVEVVRGGHRQKISIFDIVVGDVACLKIGDQVPADGLFLAGHSLQVDESSMTGESDHVEINSSQNPFLFSGTKVADGYAQMLVTSVGMNTTWGEMMSTISRDNNEQTPLQARLNKLTSSIGKVGLAVAFLVLLVLVVRYFTGNTEDENGNQEFNGSKTKADDIVNAMVRIIAAAVTIVVVAIPEGLPLAVTLTLAYSMKRMMADQAMVRKLSACETMGSATTICTDKTGTLTLNQMKVTKYWLGKEPVEDSSSIATNVLKLIQQGVALNTTGSIYRATSKSEFEFSGSPTEKALLSWAVLELDMDMERLKQNYTILHVEAFNSEKKRSGILMRKKADNKIHVHWKGAAEMILAMCSSYYDASGSMKELDDGERMTFEQIIQGMAASSLRCIAFAHKQIPEEEQEIREGRQKLKEDSLTLIGLVGIKDPCRPGVRKAVEDCQYAGVNVKMITGDNVFTARAIATECGILRPDQDINSEAVVEGEVFRKYTSEERMEKVDKICVMARSSPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIIILDDNFASVATVLRWGRCVYDNIQKFIQFQLTVNVAALVINFVAAVSAGEVPLTAVQLLWVNLIMDTLGALALATEQPTKELMEKPPVGRKEPLISNVMWRNLLAQALYQIAILLTLQFKGQSIFGVSEKVKDTLIFNTFVLCQVFNEFNARKLEKKNVFKGLHKNKLFLGIIGITIILQVVMVEFLKKFADTERLDWGQWGACIGIAAASWPIGWVVKCIPVSDKPFLSYLKW* 1049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0644 1048 PANTHER CATION TRANSPORTING ATPASE 95 1038 - -
Vvi5g0644 1048 CDD P-type_ATPase_Ca_PMCA-like 157 913 - -
Vvi5g0644 1048 Pfam E1-E2 ATPase 253 454 - -
Vvi5g0644 1048 NCBIfam HAD-IC family P-type ATPase 417 513 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi5g0644 1048 NCBIfam HAD-IC family P-type ATPase 753 861 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi5g0644 1048 Pfam Cation transporting ATPase, C-terminus 865 1034 IPR006068 -
Vvi5g0644 1048 Gene3D - 183 1033 - -
Vvi5g0644 1048 FunFam Calcium-transporting ATPase 674 825 - -
Vvi5g0644 1048 SFLD p-type atpase 458 833 IPR044492 -
Vvi5g0644 1048 FunFam Calcium-transporting ATPase 797 1039 - -
Vvi5g0644 1048 PRINTS H+-transporting ATPase (proton pump) signature 628 646 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi5g0644 1048 PRINTS H+-transporting ATPase (proton pump) signature 780 796 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi5g0644 1048 PRINTS H+-transporting ATPase (proton pump) signature 812 837 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi5g0644 1048 SUPERFAMILY Calcium ATPase, transmembrane domain M 133 1037 IPR023298 -
Vvi5g0644 1048 SUPERFAMILY HAD-like 474 885 IPR036412 -
Vvi5g0644 1048 SFLD Haloacid Dehalogenase 458 833 - -
Vvi5g0644 1048 Gene3D - 486 680 IPR023299 GO:0000166
Vvi5g0644 1048 Pfam Cation transporter/ATPase, N-terminus 133 200 IPR004014 -
Vvi5g0644 1048 FunFam Calcium-transporting ATPase 486 680 - -
Vvi5g0644 1048 SMART Cation_ATPase_N_a_2 131 205 IPR004014 -
Vvi5g0644 1048 ProSitePatterns E1-E2 ATPases phosphorylation site. 478 484 IPR018303 -
Vvi5g0644 1048 Gene3D - 473 825 IPR023214 -
Vvi5g0644 1048 FunFam Calcium-transporting ATPase 227 352 - -
Vvi5g0644 1048 Pfam haloacid dehalogenase-like hydrolase 473 794 - -
Vvi5g0644 1048 SUPERFAMILY Calcium ATPase, transduction domain A 251 350 IPR008250 -
Vvi5g0644 1048 Gene3D - 155 352 - -
Vvi5g0644 1048 NCBIfam calcium-translocating P-type ATPase, PMCA-type 123 1037 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vvi5g0644 1048 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 482 685 IPR023299 GO:0000166
Vvi5g0644 1048 PRINTS P-type cation-transporting ATPase superfamily signature 476 490 - -
Vvi5g0644 1048 PRINTS P-type cation-transporting ATPase superfamily signature 673 684 - -
Vvi5g0644 1048 PRINTS P-type cation-transporting ATPase superfamily signature 780 799 - -
Vvi5g0644 1048 PRINTS P-type cation-transporting ATPase superfamily signature 695 705 - -
Vvi5g0644 1048 PRINTS P-type cation-transporting ATPase superfamily signature 299 313 - -
Vvi5g0644 1048 PRINTS P-type cation-transporting ATPase superfamily signature 804 816 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0644 Vvi-Chr5 6026564 6039177 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0644 49 1048 Primary Pumps ATPases AT3G22910 70.506 0.0 1395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0644 K01537 - vvi:100259585 1900.95