Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0642 ATGGGCGTTCCTTCTTCTTTTTCTTCTTCCTGTAATACAGGGCTTCAATTTTCATTTCCTTCATTCTTTTTTCTTTCATCGTGTTGCATAGAGTCCATACTCGATGTGCCAGCCACCCTTAGCAAACCCAACAAGAAATGGCATTCGGCCTTTGCTACCATCTATTGTTCCAGGGCCCTTCATTCTCTTCTCAATAAGAAGAAAAGCAGCAAACTCCCGCTTAGTACTCCTTCCTTTGTTGTCGTCAGTGTTGAGCCCCACGTTGCCTTCTCAAACATTGATCACACAAGCCTCACTGCAGTGGTGAAAGAGAAAAACTTAGATCAACTTCGCGAATTGGGAGGAGTTGAAGGTGTGGCTGACGCTCTAAAAACAGATACCAAAAATGGCATCCATGGTGCTGTTGAAGATGTAGCTGAAAGGCAGGAAACGTTCGGTTCAAACACATACCCGAGGCCGCCTACTAAAAGCTTCTTCTACTTTGTGTTGGAAGCTTTTAAGGATCTTACCATTCTCATACTTCTAGCTTGTGCCACACTCTCCCTCGGTTTCGGAATTAAAGAGCATGGGCTGAAGGAAGGGTGGTATGATGGTGGAAGCATATTCGTTGCTGTCTTTCTAGTCATTTCTGTTTCTGCTGTGAGTAACTTCAGGCAAAACCGACAGTTCGAAAAGTTGTCTAAAGTCAGCAACAACATCGAGGTTGAGGTCGTTAGAGATGGGCATCGTCAGAAGATTTCTATTTTTGAAATCGTTGTTGGTGATGTTGTTTGCTTAAAAATCGGTGACCAAGTTCCTGCTGATGGCTTATTCTTGGACGGCCATTCACTACAAGTGGATGAATCCAGCATGACCGGGGAGAGCGACCATGTACAAGTTAATAGCACCCAGAATCCATTCTTGTTTTCTGGAACCAAAGTGGCTGATGGATATGCTCAAATGCTCGTGACTTCTGTTGGTATGAACACAATATGGGGGGAGATGATGAGCACAATCAGCCGCAACATTAATGAACAAACACCCCTACAAGCCCGTCTTAACAAGCTGACTTCTTCAATAGGCAAGGTTGGTTTGGCCATTGCTTTTCTAGTTCTTGTCGTGTTGGTGGTTCGCTACTTCACCAGGAATACAGAAGATGAGAACGGAAATCAGGAGTTCTATGGTAGCAAGACAAAGGCTGATGATATAGTGAACGCCATGGTCAGAATCATTGCTGCAGCAGTTACCATTGTGGTTGTGGCAATTCCAGAAGGCTTGCCTTTGGCCGTCACGCTCACACTTGCTTATTCAATGAAGAAAATGATGGCTGACCAGGCTATGGTTCGGAAGCTTCCTGCCTGTGAGACCATGGGTTCTGCAACTACTATTTGTACTGATAAAACAGGTACCCTTACTCTGAACCAGATGAAGGTGACAGAGTATTGGCTTGGCAAAGAACCTGTTGAAGATTCCTCTTCAATTGCCTCAAATGTTCTCAAACTGATTCAACAAGGAGTTGCTCTGAACACAACTGGTAGCATTTACAGGGCCACTTCAGGATCTGAATTCGAGTTCTCTGGTAGTCCCACAGAAAAAGCCATACTTTCTTGGGCTGTTCTGGAACTTGATATGGATATGGAGAGACTAAAGCAGAATCATACCATTCTTCATGTTGAAGCCTTCAATTCAGAGAAGAAAAGAAGCGGGATTTTAATGAGGAAGAAGGCTGACAACAAAATGCATGTGCACTGGAAGGGAGCAGCAGAGATGATATTAGCAATGTGTTCAAGTTACTATGATGCTTCTGGAAGCATGAAAGATCTGGATGATGCTGAAAGGATGACATTTGAGCAAATAATTCAAGGTATGGCCGCTAGCAGCCTCCGTTGCATTGCTTTTGCACATAAACAAATTCCAGAGGAAGAGCAGGAAATTAGCGAAGGCTGTCAAAGGCTAACAGAAGACAGCTTGACCCTCATAGGACTTGTGGGGATAAAAGACCCATGTAGACCAGGGGTAAGAAAAGCTGTGGAGGATTGCCAATACGCTGGAGTGAATGTCAAAATGATTACCGGTGATAATGTCTTCACTGCAAGAGCAATAGCCACTGAATGTGGAATACTAAGACCTGATCGAGACATGAATAGTGAAGCAGTGGTAGAAGGTGAGGTTTTCCGGAAGTACACCCCAGAGGAGAGAATGGAGAAAGTGGATAAAATCTGTGTGATGGCTAGATCCTCTCCCTTTGATAAACTTCTCATGGTACAATGCCTGAAACTGAAAGGCCATGTGGTTGCAGTGACAGGTGATGGCACAAATGATGCACCAGCATTAAAAGAAGCCGACATAGGACTTTCCATGGGGATTCAGGGCACAGAAGTGGCAAAGGAGAGTTCAGATATCATCATCTTGGATGATAATTTTGCTTCAGTGGCAACAGTCTTGAGATGGGGAAGATGTGTTTATAACAATATCCAGAAATTCATCCAGTTTCAGCTGACTGTGAATGTTGCAGCCCTGGTAATCAACTTTGTGGCAGCAGTTTCAGCTGGTGAGGTTCCATTGACAGCAGTGCAGTTATTGTGGGTGAACTTGATCATGGACACACTAGGTGCCCTGGCCCTCGCCACAGAGCAACCCACCAGGGAGCTGATGGAGAAACCACCCGTGGGTCGGACAGAGCCACTTATCTCCAACATCATGTGGCGGAATATATTAGCCCAAGCTTTGTATCAGATAGCTGTCCTCTTGACCCTACAGTTCAGAGGAGAATCGATCTTTGGAGTGAGCGAGAAGGTAAAGAATACCTTGATATTCAATACTTTTGTGCTTTGCCAAGTCTTCAATGAATTCAATGCAAGGAAGCTCGAGAAGAAGAATGTGTTTAAGGGGCTACATAAGAACAAGCTATTTTTGGGGATCATTGGGATGACCATTATCCTTCAGGTGGTTATGGTGGAGTTTTTGAAGAAATTTGCAGATACAGAGAGGTTAAATTGGGGACAATGGGGTGCATGCATTGGAATTGCTGCAGCATCTTGGCCAATTGGTTGGGTTGTCAAGGGCATACCTGTTTCAGATAAACCATTCCTAAGCTATCTAAAGTGGAAAATCAGGGTCTTGGACATTTTTCCACCGAGTTTGGATTTCAACTTTGGAATTTTCAGATCTGACCTAGACCCAAACTTCAGTCAGAAAACTCCTAAAACAGATATCATGGATGGAACGTGA 3210 0.4417 MGVPSSFSSSCNTGLQFSFPSFFFLSSCCIESILDVPATLSKPNKKWHSAFATIYCSRALHSLLNKKKSSKLPLSTPSFVVVSVEPHVAFSNIDHTSLTAVVKEKNLDQLRELGGVEGVADALKTDTKNGIHGAVEDVAERQETFGSNTYPRPPTKSFFYFVLEAFKDLTILILLACATLSLGFGIKEHGLKEGWYDGGSIFVAVFLVISVSAVSNFRQNRQFEKLSKVSNNIEVEVVRDGHRQKISIFEIVVGDVVCLKIGDQVPADGLFLDGHSLQVDESSMTGESDHVQVNSTQNPFLFSGTKVADGYAQMLVTSVGMNTIWGEMMSTISRNINEQTPLQARLNKLTSSIGKVGLAIAFLVLVVLVVRYFTRNTEDENGNQEFYGSKTKADDIVNAMVRIIAAAVTIVVVAIPEGLPLAVTLTLAYSMKKMMADQAMVRKLPACETMGSATTICTDKTGTLTLNQMKVTEYWLGKEPVEDSSSIASNVLKLIQQGVALNTTGSIYRATSGSEFEFSGSPTEKAILSWAVLELDMDMERLKQNHTILHVEAFNSEKKRSGILMRKKADNKMHVHWKGAAEMILAMCSSYYDASGSMKDLDDAERMTFEQIIQGMAASSLRCIAFAHKQIPEEEQEISEGCQRLTEDSLTLIGLVGIKDPCRPGVRKAVEDCQYAGVNVKMITGDNVFTARAIATECGILRPDRDMNSEAVVEGEVFRKYTPEERMEKVDKICVMARSSPFDKLLMVQCLKLKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIIILDDNFASVATVLRWGRCVYNNIQKFIQFQLTVNVAALVINFVAAVSAGEVPLTAVQLLWVNLIMDTLGALALATEQPTRELMEKPPVGRTEPLISNIMWRNILAQALYQIAVLLTLQFRGESIFGVSEKVKNTLIFNTFVLCQVFNEFNARKLEKKNVFKGLHKNKLFLGIIGMTIILQVVMVEFLKKFADTERLNWGQWGACIGIAAASWPIGWVVKGIPVSDKPFLSYLKWKIRVLDIFPPSLDFNFGIFRSDLDPNFSQKTPKTDIMDGT* 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0642 1069 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 464 658 IPR023299 GO:0000166
Vvi5g0642 1069 CDD P-type_ATPase_Ca_PMCA-like 138 894 - -
Vvi5g0642 1069 PANTHER CATION TRANSPORTING ATPASE 76 1019 - -
Vvi5g0642 1069 Gene3D - 136 333 - -
Vvi5g0642 1069 Pfam E1-E2 ATPase 234 435 - -
Vvi5g0642 1069 ProSitePatterns E1-E2 ATPases phosphorylation site. 459 465 IPR018303 -
Vvi5g0642 1069 Pfam haloacid dehalogenase-like hydrolase 454 775 - -
Vvi5g0642 1069 SUPERFAMILY Calcium ATPase, transduction domain A 232 331 IPR008250 -
Vvi5g0642 1069 SFLD p-type atpase 439 814 IPR044492 -
Vvi5g0642 1069 FunFam Calcium-transporting ATPase 467 661 - -
Vvi5g0642 1069 SFLD C1.7: P-type atpase like 439 814 - -
Vvi5g0642 1069 Pfam Cation transporting ATPase, C-terminus 846 1014 IPR006068 -
Vvi5g0642 1069 PRINTS H+-transporting ATPase (proton pump) signature 761 777 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi5g0642 1069 PRINTS H+-transporting ATPase (proton pump) signature 609 627 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi5g0642 1069 PRINTS H+-transporting ATPase (proton pump) signature 793 818 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi5g0642 1069 SUPERFAMILY HAD-like 455 866 IPR036412 -
Vvi5g0642 1069 PRINTS P-type cation-transporting ATPase superfamily signature 457 471 - -
Vvi5g0642 1069 PRINTS P-type cation-transporting ATPase superfamily signature 785 797 - -
Vvi5g0642 1069 PRINTS P-type cation-transporting ATPase superfamily signature 676 686 - -
Vvi5g0642 1069 PRINTS P-type cation-transporting ATPase superfamily signature 280 294 - -
Vvi5g0642 1069 PRINTS P-type cation-transporting ATPase superfamily signature 654 665 - -
Vvi5g0642 1069 PRINTS P-type cation-transporting ATPase superfamily signature 761 780 - -
Vvi5g0642 1069 SUPERFAMILY Calcium ATPase, transmembrane domain M 113 1018 IPR023298 -
Vvi5g0642 1069 Gene3D - 467 661 IPR023299 GO:0000166
Vvi5g0642 1069 SMART Cation_ATPase_N_a_2 112 186 IPR004014 -
Vvi5g0642 1069 Gene3D - 164 1006 - -
Vvi5g0642 1069 FunFam Calcium-transporting ATPase 208 333 - -
Vvi5g0642 1069 FunFam Calcium-transporting ATPase 655 806 - -
Vvi5g0642 1069 FunFam Calcium-transporting ATPase 778 1020 - -
Vvi5g0642 1069 NCBIfam calcium-translocating P-type ATPase, PMCA-type 95 1018 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vvi5g0642 1069 NCBIfam HAD-IC family P-type ATPase 201 372 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi5g0642 1069 NCBIfam HAD-IC family P-type ATPase 734 842 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi5g0642 1069 NCBIfam HAD-IC family P-type ATPase 398 495 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi5g0642 1069 Gene3D - 454 806 IPR023214 -
Vvi5g0642 1069 Pfam Cation transporter/ATPase, N-terminus 114 181 IPR004014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0642 Vvi-Chr5 5997101 6009831 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0642 30 1032 Primary Pumps ATPases AT3G22910 70.850 0.0 1400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0642 K01537 - vvi:100242476 1927.14