Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0641 ATGTCCAACAAGTTGGACCTAAGCTCGGTTTGCATGGAGTCTTTACTAGAAGTGCCAAGCACCCTTAGCAAACCCAAGAGAAGATGGCACTTGGCCTTCGCTACAATTTATTGTTCCCGGGCTCTGTACTCCCTTCTCAATCATCCTGTCAACAATAAGAAGAGGAGCAAAACCCTGCCTACTTCACCCTCGTCGTTTGTCATACTCAATGTTAAGCCCCAGCATGGATTCTCCAACTTTGATCAACATAGCCTCACTCAAATAGTGAAGCACAAAAGCTTGACCCAGCTTCTTGAGCTTGGAGGTGTTGAAGGTGTGGCCATTGTTCTAGAAACAGATGCTGAAAATGGCATCCATGGAGCTGTTGAAGGTGTCACCTGCAGGCGAAAAGCTTTCGGTTCTAACACCTACCAGGAGCCGCCTACGAAGAGCTTCTTCTACTTTGTGGTGGAAGCTTTTAAGGATGTTACCATTCTCATACTTGTAGCTTGTGCCACTCTTTCTCTTGGCTTTGGCATTAAAGAGGAGGGGCTGAAAGAAGGGTGGTATGACGGTGGAAGCATATTGGTCGCTGTCTTTCTGGTCATTTCTGTCTCTGCTGTGAGTAACTTCAGGCAGAATAGACAGTTCGATAAGTTGTCTAAAGTCAGCAATAATATCCAGGTTGATGTTGTCCGGGATGGGCGACGTCAGCAGATTTCTATATTTGAGGTTGTTGTTGGAGATGTTGTTTGCTTAAAGATTGGAGATCAAGTTCCAGCCGACGGATTGTTCCAGGATGGGCATTCGTTACAAGTGGATGAATCAAGCATGACGGGGGAGAGTGACCATGTGGAAGTCGACACCAGCCTGAATCCATTTTTCCGTGATGCTAATGAACAGACACCCTTACAAGCCAGGCTTAACAAGCTTACTTCATCAATAGGTAAGGTTGGTTTGGCAGTTGCCTTTCTTGTTCTTACGGTGTTGCTGGTGCGCTACTTCACAGGGAGTACAGAAGATGAGAATGGAAATCAGGAGTTCAAAGGCAGTCTGACAAAGGCTGATGATATAGTGAATGCTGTGGTGAGAATCATTGCAGCTGCAGTTACCATTGTGGTTGTGGCAATCCCCGAAGGCTTGCCTTTGGCTGTCACACTCACTCTTGCTTATTCAATGAAGAGAATGATGGCTGACCAGGCTATGGTTCGAAGGCTCTCTGCCTGTGAGACGATGGGTTCTGCCACCACCATTTGTACCGACAAAACAGGTACCCTCACTCTGAACCAGATGAAGGTGACAAAGTTTTGGCTTGGCCAAGACCCTATTCAAGAGAATGCTTCCTCTTCAATTGCCACAGATGTCCTCAAACTGATACAACAAGGTGTTGCCCTAAATACCACTGGAAGCATTTACAGGGCTACCTCAGGATCAAAATACGAGTTCTCAGGCAGTCCTACTGAAAAAGCAATTCTTTCTTGGGCGGTTCTGGAGCTGAACATGGACATGGAGGAATTGAAGCAGACTTGTACAATTCTCCGGGTAGAAGCATTCAATTCAGAGAAGAAACAAAGTGGGGTTGCATTGAGGAACAAAGCTGACAACAAAGTCCATGTTCACTGGAAAGGAGCAGCAGAGATGATACTAGAAATGTGTTCTACTTACTACGATGCTTCTGGAAGCATGAGAGATCTTGGTCATGTTGAAAGGACGACATTTGAGCAAATAATCCAAGGTATGGCTGCTAGCAGCCTCCGTTGCATTGCTTTTGCACACAACCAACTTCCAGAAGAAGAGCATGAAATTAGAGAAGCCACCCAAAAGCTAAAAGAAGACAGCTTGACCCTTATAGGGCTTGTGGGGATAAAGGACCCATGTAGACCAGGGGTGAGAAAAGCCGTGGAAGATTGCCAACACGCTGGAGTGAATGTCAAAATGATCACCGGTGATAATATTTTCACTGCAAGAGCTATAGCTACTGAATGTGGAATACTAAGACCTGACCAAGACATGAACAATGAAGCAGTTGTAGAAGGTGAAGTATTCTGGCAGTACACCCCAGATGAGAGAATGGAGAAAGTTGATAAAATCCGTGTGATGGCTAGATCCTCTCCTTTTGATAAACTTCTCATGGTACAGTGCTTGAAACAAAAAGGTCATGTTGTAGCAGTCACAGGTGATGGCACAAATGATGCACCAGCATTAAAAGAAGCTGACATAGGACTTTCTATGGGCATTCAGGGCACAGAAGTGGCAAAGGAGAGTTCAGATATCATCATCTTGGATGATAATTTTGCTTCAGTGGCCACTGTTTTGAGATGGGGAAGATGTGTTTATAACAACATCCAGAAATTCATCCAGTTTCAGCTGACGGTGAATGTTGCAGCCCTTGTAATCAACTTTGTGGCTGCAGTTTCAGCTGGTGAGATTCCATTGACTGCAGTGCAGTTATTGTGGGTGAACTTGATCATGGACACATTAGGTGCCCTGGCCCTTGCCACAGAGCAACCCACCAAGGAGCTCATGGAGAAACCACCCATGGGTCGGACAGAGCCACTCATCTCCAATATCATGTGGCGGAATCTATTAGCCCAAGCTTTGTATCAGATAGCGGTCCTCTTGACCCTACAGTTCAAAGGAGAATCAATCTTTGGTGTGAGCAAGAAGGTAAAGGATACCTTGATATTCAATACATTTGTGCTATGCCAAGTCTTCAATGAATTCAATGCAAGGGAGCTCGAAAAGAAGACTATTTTTAAGGGGTTACATAAGAACAAGCTATTTCTGGGGATCATTGGAATAACCATTATCCTTCAGGTGGTTATGGTCGAATTTTTGAAGAAATTTGCAGATACAGAGAGGTTGGATTGGGGACAATGGGTTATGTTGTGCTGCATCCACCTCTCTCTTCCCACATTCCCCTACTCTTGTTTGTCTTTGTTTTCGCCGCATCATCGTTACATACCCTTTTGTCTATCCCAAAGCATGTCCAATATTTTTCATCTTAACTTGAATTGCAAAGAGCCCATACCCGATGTGCCAACTATCCTTAGCAAACCCAACAAGAGGTGGCACTTGGCTTTACATCCTCTTCTCAATGAGAAGAGGAAGGAGAGCAGCAAACTCCCGGTTACTACTCCTTCCTTTGTTGCCCTCAATGTTAAGCCCGATGCCTTCTCAAGCATTGATCAGACAAGTCTCACTGCAATTGTGAAGGAGAAAAACTTAGACCTGCTTCTTGAATTTGGAGGAGTTGAAAGCGTGGCTGATGCTCTAGAAACAGATGTCAAAAATGGCATCTGTGGTGCTGTTCACGATATTGCTCTCAGACAGGAGGTTTTCGGTTCAAACACATACCAGACTGCTAAAAGCTTATTCCACTTCGTGATGGAACCTTTTAAGGATCTCACCATTCTCATACTTCTACTTTGTGCAACGCTCTCTCTCGGTTCTGGAATTAAAGAGCATGGACTGAAGGAAGGGTGGTATGATGGTGGAAGCATATTTGCTGCCGTCCTTCTAATCATTTCTGTGTCTACTCTGAGTAACTTCAGGCATAACAGACTATTAGAAAAATTGTCTAAAGTCAGCAACAATATCAAAGTTGATGTTGTGCGAAATGGGCGCCGTCAGCAGATCTCTATATTTGAAATAGTAGTTGGTGATGTTGTTTGCCTAAAAATTAGTGACCAAGTTCCTGCTGATGGCTTATTCTTGGACGGGCATCCACTGCAAGTGGATGAATCCAGCATGACTGGAGAGAGTGACCATGTAGAAGTTAATAGTAGCCAGAATCCATTTTTGTTTTCTGGAACCAAAGTGGCTGATGGATCTGCTCAAATGCTTGTGACATCGGTTGGTGTGAACACAACATGCGGCCAGATGATGAGCACAATCAGCCGCGACACTAATGACCAAACACCCTTACAAGCCAGACTTAAGAAACTTACCTCATCAACAGGTAAGGTTGGTATGGCAATTGCTTTTCTAGTGCTTGTAGCGTCGTTGGTTCGCTATTTCAGCGGCAATACAGAAGATGAGAATGGAAATCAGGAGTTCATTGGCAGCAACACAAAGGCTGTTGATATGGTGAATTCTGTGGTAAGAATCATTGCGGCCGCAGTTACCATTGTGGTTGTGGCAATGCCAGAAGGCTTGTCGTTGGCTGTCACGCTCATTCTTGCTTATTCAATGAAGAGAATGATGGCTGACCAGACAATGGTTCGGAAGCTCTCTGCCTGTGAGACCATGGGCTCTGTCACTACCATTTGTACCGACAAAACAGGCACTCTCACTCTGAACCAGATGAAGGTGATAAAATTTTGTCTTGGCCAAGAACCTATTGAAGCTTTCTCTTCAATTTCAACAAATCTTCTCAACCTCATCCAACAAGGAGCTGCTCTAAACACATCTGGTAGCGTTTACAGGGCTACTTCAGGATCTAAGTTCGAGTTATCTGGTAGTCCAACTGAAAAAGCAATTCTTTCATGGGCTGTACTGGAACTTGATATGGACATGGAGATATTGAAGCAGACTTGTACCATTCTCCATGTTGAAGCCTTCAAATCGGAGAAGAAAAGAAGTGGGGTTTCAATAAGGAGTAAGGCCGATAACACAATCCATGTGCACTGGAAGGGAGCAGCAGAGATGATACTAGCAATGTGTTCGAGGTACTATGATGCTTCTGGAAGCATGAAAGATATGGATGATGATGAAAGGATGATATTTGAGCAAATAATTCAAGGTATGGCGGCTAGCAGCCTTCGCTGCATTGCTTTTGCACATATACAGATTTCAGAGGAAGAGCATGAAATTGGTGTAGGTCTGCAAAAGCTGAAAGAAGACAGCTTGACCCTTATAGGACTGGTAGGGATAAAGGACCCATGTAGACCAGGGGTGAGAAAGGCTGTGGAAGACTGCCAATGCGCTGGAGTGAACGTCAAAATGATTACCAGTGATAATGCATTCACTGCAAGAGCCATAGCCACTGAATGCGGAATACTAAAACCTGATCAAGGCATGACCAATGAAGCAGTAGTTGAAGGTGAAATATTTCGGAACTACACCCTAGAGGAGAGAATGGAGAAAGTTGATAAAATTCGTGTAATGGCTAGATCCTCTCCCTTTGATAAACTTCTCATGGTACAGTGCTTGAAACAGAAAGGTCATGTTGTTGCAGTGACAGGTGATGGCACAAATGATGCACCAGCATTAAAGGAAGCTCACATAGGACTTTCTATGGGGATACAGGGCACTGAAGTTGCTAAGGAGAGCTCAGATATCATCGTCTTGGATGATAATTTTACTTCTGTTGCTACAGTTTTGAGGTGGGGCAGGTGTAAACAAGTTGTTTTGGGGGATGATTGGGATAACCATTATACTTGA 5364 0.4431 MSNKLDLSSVCMESLLEVPSTLSKPKRRWHLAFATIYCSRALYSLLNHPVNNKKRSKTLPTSPSSFVILNVKPQHGFSNFDQHSLTQIVKHKSLTQLLELGGVEGVAIVLETDAENGIHGAVEGVTCRRKAFGSNTYQEPPTKSFFYFVVEAFKDVTILILVACATLSLGFGIKEEGLKEGWYDGGSILVAVFLVISVSAVSNFRQNRQFDKLSKVSNNIQVDVVRDGRRQQISIFEVVVGDVVCLKIGDQVPADGLFQDGHSLQVDESSMTGESDHVEVDTSLNPFFRDANEQTPLQARLNKLTSSIGKVGLAVAFLVLTVLLVRYFTGSTEDENGNQEFKGSLTKADDIVNAVVRIIAAAVTIVVVAIPEGLPLAVTLTLAYSMKRMMADQAMVRRLSACETMGSATTICTDKTGTLTLNQMKVTKFWLGQDPIQENASSSIATDVLKLIQQGVALNTTGSIYRATSGSKYEFSGSPTEKAILSWAVLELNMDMEELKQTCTILRVEAFNSEKKQSGVALRNKADNKVHVHWKGAAEMILEMCSTYYDASGSMRDLGHVERTTFEQIIQGMAASSLRCIAFAHNQLPEEEHEIREATQKLKEDSLTLIGLVGIKDPCRPGVRKAVEDCQHAGVNVKMITGDNIFTARAIATECGILRPDQDMNNEAVVEGEVFWQYTPDERMEKVDKIRVMARSSPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIIILDDNFASVATVLRWGRCVYNNIQKFIQFQLTVNVAALVINFVAAVSAGEIPLTAVQLLWVNLIMDTLGALALATEQPTKELMEKPPMGRTEPLISNIMWRNLLAQALYQIAVLLTLQFKGESIFGVSKKVKDTLIFNTFVLCQVFNEFNARELEKKTIFKGLHKNKLFLGIIGITIILQVVMVEFLKKFADTERLDWGQWVMLCCIHLSLPTFPYSCLSLFSPHHRYIPFCLSQSMSNIFHLNLNCKEPIPDVPTILSKPNKRWHLALHPLLNEKRKESSKLPVTTPSFVALNVKPDAFSSIDQTSLTAIVKEKNLDLLLEFGGVESVADALETDVKNGICGAVHDIALRQEVFGSNTYQTAKSLFHFVMEPFKDLTILILLLCATLSLGSGIKEHGLKEGWYDGGSIFAAVLLIISVSTLSNFRHNRLLEKLSKVSNNIKVDVVRNGRRQQISIFEIVVGDVVCLKISDQVPADGLFLDGHPLQVDESSMTGESDHVEVNSSQNPFLFSGTKVADGSAQMLVTSVGVNTTCGQMMSTISRDTNDQTPLQARLKKLTSSTGKVGMAIAFLVLVASLVRYFSGNTEDENGNQEFIGSNTKAVDMVNSVVRIIAAAVTIVVVAMPEGLSLAVTLILAYSMKRMMADQTMVRKLSACETMGSVTTICTDKTGTLTLNQMKVIKFCLGQEPIEAFSSISTNLLNLIQQGAALNTSGSVYRATSGSKFELSGSPTEKAILSWAVLELDMDMEILKQTCTILHVEAFKSEKKRSGVSIRSKADNTIHVHWKGAAEMILAMCSRYYDASGSMKDMDDDERMIFEQIIQGMAASSLRCIAFAHIQISEEEHEIGVGLQKLKEDSLTLIGLVGIKDPCRPGVRKAVEDCQCAGVNVKMITSDNAFTARAIATECGILKPDQGMTNEAVVEGEIFRNYTLEERMEKVDKIRVMARSSPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEAHIGLSMGIQGTEVAKESSDIIVLDDNFTSVATVLRWGRCKQVVLGDDWDNHYT* 1788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0641 1787 ProSitePatterns E1-E2 ATPases phosphorylation site. 1419 1425 IPR018303 -
Vvi5g0641 1787 Gene3D - 125 281 - -
Vvi5g0641 1787 Pfam haloacid dehalogenase-like hydrolase 409 732 - -
Vvi5g0641 1787 PRINTS H+-transporting ATPase (proton pump) signature 750 775 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi5g0641 1787 PRINTS H+-transporting ATPase (proton pump) signature 566 584 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi5g0641 1787 PRINTS H+-transporting ATPase (proton pump) signature 718 734 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi5g0641 1787 SUPERFAMILY Calcium ATPase, transmembrane domain M 100 961 IPR023298 -
Vvi5g0641 1787 ProSitePatterns E1-E2 ATPases phosphorylation site. 414 420 IPR018303 -
Vvi5g0641 1787 Gene3D - 1414 1766 IPR023214 -
Vvi5g0641 1787 Pfam Cation transporter/ATPase, N-terminus 101 168 IPR004014 -
Vvi5g0641 1787 Pfam Cation transporter/ATPase, N-terminus 1076 1141 IPR004014 -
Vvi5g0641 1787 PRINTS P-type cation-transporting ATPase superfamily signature 267 281 - -
Vvi5g0641 1787 PRINTS P-type cation-transporting ATPase superfamily signature 718 737 - -
Vvi5g0641 1787 PRINTS P-type cation-transporting ATPase superfamily signature 611 622 - -
Vvi5g0641 1787 PRINTS P-type cation-transporting ATPase superfamily signature 742 754 - -
Vvi5g0641 1787 PRINTS P-type cation-transporting ATPase superfamily signature 412 426 - -
Vvi5g0641 1787 PRINTS P-type cation-transporting ATPase superfamily signature 633 643 - -
Vvi5g0641 1787 SFLD C1.7: P-type atpase like 1400 1773 - -
Vvi5g0641 1787 SFLD Haloacid Dehalogenase 394 771 - -
Vvi5g0641 1787 Pfam haloacid dehalogenase-like hydrolase 1413 1734 - -
Vvi5g0641 1787 Gene3D - 151 206 - -
Vvi5g0641 1787 Pfam Cation transporting ATPase, C-terminus 803 967 IPR006068 -
Vvi5g0641 1787 NCBIfam HAD-IC family P-type ATPase 354 441 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi5g0641 1787 NCBIfam HAD-IC family P-type ATPase 689 800 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi5g0641 1787 NCBIfam HAD-IC family P-type ATPase 1356 1439 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi5g0641 1787 NCBIfam HAD-IC family P-type ATPase 1692 1773 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi5g0641 1787 PANTHER CATION TRANSPORTING ATPASE 63 970 - -
Vvi5g0641 1787 FunFam Calcium-transporting ATPase 1427 1621 - -
Vvi5g0641 1787 FunFam Calcium-transporting ATPase 612 763 - -
Vvi5g0641 1787 FunFam Calcium-transporting ATPase 1170 1293 - -
Vvi5g0641 1787 Gene3D - 1124 1773 - -
Vvi5g0641 1787 Gene3D - 1100 1293 - -
Vvi5g0641 1787 Gene3D - 291 961 - -
Vvi5g0641 1787 NCBIfam calcium-translocating P-type ATPase, PMCA-type 1063 1774 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vvi5g0641 1787 NCBIfam calcium-translocating P-type ATPase, PMCA-type 289 968 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vvi5g0641 1787 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 1423 1626 IPR023299 GO:0000166
Vvi5g0641 1787 SUPERFAMILY Calcium ATPase, transmembrane domain M 1075 1411 IPR023298 -
Vvi5g0641 1787 Pfam E1-E2 ATPase 221 282 - -
Vvi5g0641 1787 Pfam E1-E2 ATPase 1193 1395 - -
Vvi5g0641 1787 Pfam E1-E2 ATPase 292 390 - -
Vvi5g0641 1787 SUPERFAMILY Calcium ATPase, transduction domain A 1192 1291 IPR008250 -
Vvi5g0641 1787 FunFam Calcium-transporting ATPase 735 979 - -
Vvi5g0641 1787 Coils Coil 581 601 - -
Vvi5g0641 1787 Gene3D - 409 763 IPR023214 -
Vvi5g0641 1787 Gene3D - 422 618 IPR023299 GO:0000166
Vvi5g0641 1787 Gene3D - 1427 1621 IPR023299 GO:0000166
Vvi5g0641 1787 FunFam Calcium-transporting ATPase 1615 1766 - -
Vvi5g0641 1787 SUPERFAMILY HAD-like 410 823 IPR036412 -
Vvi5g0641 1787 SUPERFAMILY HAD-like 1415 1770 IPR036412 -
Vvi5g0641 1787 SFLD p-type atpase 1400 1773 IPR044492 -
Vvi5g0641 1787 SFLD p-type atpase 394 771 IPR044492 -
Vvi5g0641 1787 FunFam Calcium-transporting ATPase 422 618 - -
Vvi5g0641 1787 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 418 623 IPR023299 GO:0000166
Vvi5g0641 1787 SUPERFAMILY Calcium ATPase, transduction domain A 219 282 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0641 Vvi-Chr5 5964403 5982941 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0641 24 976 Primary Pumps ATPases AT3G63380 66.600 0.0 1251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0641 K01537 - vvi:100252717 1811.58