Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0638 ATGGGTGAAGTTCTGGCTTCAGTTGCTGAGACGATAAAGAACTTTGCTGTAATGTACCTGGTAGACATCACAGAGTATGAGAGCAATCAAATCTTTGCCTATATAAATATGAAGCATCCAGGATACCTATCCATTCAGAAATTGTCACTTTATTATGTTGCTCGCAGGAAGGAGGAGTTCGGTTCAAACACATACCAGAAGCCCCCTACGAAAAGCTTCCTCCACTTTGTGGTGGAAGCATTTAAGGATCTTACCATTCTCGTACTTCTTGCTTGTGCTACACTCTCTGTCGGTTTTGGGATTAAAGAGCATGGAGTGAAGGAAGGGTGGTATGATGGTGGAAGCATCTTTCTTGCTATCTTTCTAGTCATTTCTGTCTCTGCTGTAATTAACTTCAAACAAAACAGACAATTTGATAAGTTGTCAAAGGCCAGCAACAATATACAGGTTGATGTTGTCCGGCATGGGCGACTTCAGCAGATTTCTATATTTGAGATTGTTGTTGGAGATGTTGTTTGCTTGAAGATTGGAGATCAAGTTCCTGCTGATGGATTGTTCTTGGATGGGCATTCATTACAAGTGGATGAATCAAGCATGACAGGGGAGAATGATCATGTGGAAGTCAACACCAGCCTGAATCCATTTTTGTTTTCTGGAACCAAAGTGGCTGATGGATATGCTCGAATGCTTGTGACGTCTGTTGGGATGAACACAACGTGGGGTGAGATGATGAGCACAATCAGCCACGACGCTAATGAACAGACACCCTTACAAGCTCGGCTTAACAAGCTAACTTCATCAATTGGTAAGTTTGGTCTGGCAGCTGCTTTTCTAGTTCTTGTATTGTTGCTGGTTCGCTACTTCACAGGGAATACAAAAGATGAGAATGGAAATCAAGAGTTCAATGCCAGCAAGACAAAGGCTGGTGACATAGTGAATGCTGTGGTCGGAATCATTGCTGCCGCAATTACCATTGTGGTTGTTGCCATTCCAGAAGGCTTGCCGTTGGCTGTCACACTCACTCTTGGTTATTCAATGAAAAGAATGATGGCTGACCAGGTTATGGTTCGGAAGCTCTCTGCCTGTGAGACCATGGGCTTCGCCACCATCATTTGTACTGACAAAACAGGTACCCTCACTCTGAACCAGATGAAGGTGACAAAATTTTGGCTTGGCAAACAACCTATTGAAGCTGCCTCTTCAATTGCCACAGATCTTCTCGAATTGATTCGACAAGGAGTTGCTTTGAACACGACTGGTAGCATTTATAGGGAGCCTTCCTCATCTAAATTCGAGTTCTCTGGTAGTCCCACTGAAAAAGCAATACTTTCTTGGGCTGTCCTGGAACTTGGTATGGACATGGAGAGAATGAAGAAGAATTACACCATTCTTCATGTTGAAGCTTTCAATTCGGAGAAGAAAAGGAGCGGTATTTTAATAAGGAAGAAGGCTGACAACACAATCCACGCGCACTGGAAGGGAGCGGCAGAGATGATACTAGCAATGTGTTCCAGTTACTATGACGCTTCTGGAAGCATGAAAGATCTGGATGATGGTAAAAGGATGACATTTGAGCAAACAATTCAAGGCACGGCAGCTAGCAGCCTCCGCTGCATGGCTTTTGCCCATAAACAAATTCGAAAGGAAGAGCAGGAAATTGGGGAAGGCCTGCAAAAGCTAAAAGAAGACAGCTTGACCCTTATAGCACTGGTCGGAATAAAGGACCCATGTAGACCAGGGGTGAGAAAAGCTGTGGAAGATTGCCAATATGCTGGAGTGAATGTTAAAATGATCACTGGCGACAATATTTTCACTGCGAGAGCCATGGCCACAGAATGTGGAATATTAAGACCAGGTCAAGAAATGGACAGTGAAGCAGTGGTAGAAGGTGAGGTATTCCGGCAGTACACCGAGGAAGAGAGAATGGAGCACGTCGATAAAATCCTTGTGATGGCTGGATCCTCTCCCTTTGATAAACTTCTTATGGTAGAGTGCTTGAAAAAGAAAGGCCATGTGGTCGCAGTCACAGGTGATGGCACGAATGATGCACCGGCATTACAAGAAGCTGACATAGGACTTTCCATGGGTATTCAGGGCACAGAAGTGGCAAAGGAGAGCTCAGATATCATCATCTTGGATGATAATTTTGCTTCTGTAGCCACGGTTTTGAGGTGGGGAAGGTGTGTTTATAACAACATTCAGAAATTCATCCAGTTCCAGCTCACATTGAATGTTGCAGCCCTTGTAATCAACTGTGTGGCAGCAGCTTCAACTGCTGAGGTCCCACTGACAGCATTCCACTTACTATGGATGAACTTGGTCATGGACACATTAGGTGTTCTGGCTCTCGCAACAGACCGGCCCACCAAGGAACTCATGGAGAAGCCACCTGTGGGTCGAGCTGAGCCACTCATCACCAACATCATGTGGAGGAATCTCTTAGCCCAAGCTCTGTATCAGATAGTCGTACTCTTGACCCTACATTTCAAAGGACAATCAATCTTTGGCGTGAATAAGGAGAAAGACACCCTGATATTCAACACTTCCGTTCTATGCCAAGTCTTCAATGAATTCAATGCAAGGGAGCTGGAGAAAAAGAACGTGTTTGAGGGGATACATAAGAACAAGTTGTTTTTGGGGATCGTTGGGCTAGCCATTATCCTTCAGGTGGTTATGGTGGAATTTTTGAATAAATTTGCAGATACAGAGAGGTTGGATTGGGGACAATGGGTTGCATGCATTGGAGTTGCAGCTGCATCCTGGCCAATCGGCTGGCTTGTCAAGTGCATACCTGTTTCAGATAAACCAGTTCTCGACTATCTGAAGTGCTATAATCCTATGATTTGGTGCCATTCAACATCATGCTTATTTACTTAA 2877 0.4442 MGEVLASVAETIKNFAVMYLVDITEYESNQIFAYINMKHPGYLSIQKLSLYYVARRKEEFGSNTYQKPPTKSFLHFVVEAFKDLTILVLLACATLSVGFGIKEHGVKEGWYDGGSIFLAIFLVISVSAVINFKQNRQFDKLSKASNNIQVDVVRHGRLQQISIFEIVVGDVVCLKIGDQVPADGLFLDGHSLQVDESSMTGENDHVEVNTSLNPFLFSGTKVADGYARMLVTSVGMNTTWGEMMSTISHDANEQTPLQARLNKLTSSIGKFGLAAAFLVLVLLLVRYFTGNTKDENGNQEFNASKTKAGDIVNAVVGIIAAAITIVVVAIPEGLPLAVTLTLGYSMKRMMADQVMVRKLSACETMGFATIICTDKTGTLTLNQMKVTKFWLGKQPIEAASSIATDLLELIRQGVALNTTGSIYREPSSSKFEFSGSPTEKAILSWAVLELGMDMERMKKNYTILHVEAFNSEKKRSGILIRKKADNTIHAHWKGAAEMILAMCSSYYDASGSMKDLDDGKRMTFEQTIQGTAASSLRCMAFAHKQIRKEEQEIGEGLQKLKEDSLTLIALVGIKDPCRPGVRKAVEDCQYAGVNVKMITGDNIFTARAMATECGILRPGQEMDSEAVVEGEVFRQYTEEERMEHVDKILVMAGSSPFDKLLMVECLKKKGHVVAVTGDGTNDAPALQEADIGLSMGIQGTEVAKESSDIIILDDNFASVATVLRWGRCVYNNIQKFIQFQLTLNVAALVINCVAAASTAEVPLTAFHLLWMNLVMDTLGVLALATDRPTKELMEKPPVGRAEPLITNIMWRNLLAQALYQIVVLLTLHFKGQSIFGVNKEKDTLIFNTSVLCQVFNEFNARELEKKNVFEGIHKNKLFLGIVGLAIILQVVMVEFLNKFADTERLDWGQWVACIGVAAASWPIGWLVKCIPVSDKPVLDYLKCYNPMIWCHSTSCLFT* 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0638 958 Gene3D - 382 576 IPR023299 GO:0000166
Vvi5g0638 958 PRINTS H+-transporting ATPase (proton pump) signature 708 733 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi5g0638 958 PRINTS H+-transporting ATPase (proton pump) signature 676 692 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi5g0638 958 PRINTS H+-transporting ATPase (proton pump) signature 524 542 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi5g0638 958 FunFam Calcium-transporting ATPase 570 721 - -
Vvi5g0638 958 NCBIfam HAD-IC family P-type ATPase 314 411 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi5g0638 958 NCBIfam HAD-IC family P-type ATPase 116 289 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi5g0638 958 NCBIfam HAD-IC family P-type ATPase 650 756 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi5g0638 958 SFLD p-type atpase 354 729 IPR044492 -
Vvi5g0638 958 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 378 581 IPR023299 GO:0000166
Vvi5g0638 958 ProSitePatterns E1-E2 ATPases phosphorylation site. 374 380 IPR018303 -
Vvi5g0638 958 PANTHER CATION TRANSPORTING ATPASE 51 933 - -
Vvi5g0638 958 SUPERFAMILY Calcium ATPase, transmembrane domain M 53 932 IPR023298 -
Vvi5g0638 958 Gene3D - 52 248 - -
Vvi5g0638 958 Pfam E1-E2 ATPase 148 350 - -
Vvi5g0638 958 Gene3D - 79 928 - -
Vvi5g0638 958 FunFam Calcium-transporting ATPase 693 934 - -
Vvi5g0638 958 Pfam Cation transporting ATPase, C-terminus 761 929 IPR006068 -
Vvi5g0638 958 FunFam Calcium-transporting ATPase 122 248 - -
Vvi5g0638 958 SUPERFAMILY HAD-like 370 778 IPR036412 -
Vvi5g0638 958 SUPERFAMILY Calcium ATPase, transduction domain A 147 246 IPR008250 -
Vvi5g0638 958 SFLD Haloacid Dehalogenase 354 729 - -
Vvi5g0638 958 PRINTS P-type cation-transporting ATPase superfamily signature 700 712 - -
Vvi5g0638 958 PRINTS P-type cation-transporting ATPase superfamily signature 591 601 - -
Vvi5g0638 958 PRINTS P-type cation-transporting ATPase superfamily signature 569 580 - -
Vvi5g0638 958 PRINTS P-type cation-transporting ATPase superfamily signature 372 386 - -
Vvi5g0638 958 PRINTS P-type cation-transporting ATPase superfamily signature 676 695 - -
Vvi5g0638 958 PRINTS P-type cation-transporting ATPase superfamily signature 195 209 - -
Vvi5g0638 958 Gene3D - 369 721 IPR023214 -
Vvi5g0638 958 FunFam Calcium-transporting ATPase 382 576 - -
Vvi5g0638 958 NCBIfam calcium-translocating P-type ATPase, PMCA-type 26 932 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vvi5g0638 958 Pfam Cation transporter/ATPase, N-terminus 53 96 IPR004014 -
Vvi5g0638 958 Pfam haloacid dehalogenase-like hydrolase 370 690 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0638 Vvi-Chr5 5920946 5929802 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0638 53 942 Primary Pumps ATPases AT3G22910 70.773 0.0 1251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0638 K01537 - vvi:100246058 1706.03