Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0633 ATGCAGCTTCCCGATTCCGGTGAGGTCGTCTCCGTGACCGAACCCGTAAAGGACGACCAGTCAAAGCCGTTGGACGCGGCCTCGACCGGCGAAAACAATGCCGATGATCAGTCGATTCTTGATGTTTCTGGGAGGAATTTGGAGTTTTCAGTGTTGGAAAATTGTGAGAGTACTGTTGAGGGGTTGTATTTATACAAAAATGTATTCAATTTGATTCCACAGCGGTTGGGCGAGTTGGGGAGGTTGAAGATGTTGAAGTTCTTCGCAAATGAGATTAACTTGTTTCCGCCTGAGTTTAGGAATTTGGTGGGATTGGAATGCTTGCAGGTCAAGTTATCATCGCCAGGGTTAAATGGATTGCCTTTGCATAAGCTGAGAGGTTTGAAGGAGCTGGAGCTCTGTAAGGTGCCGCCGCGACCTTCGGCTTTTCCATTGTTGAGCGAGATTGCGGGGCTTAAGTGTTTGACTAAGCTCTCTGTGTGTCACTTCTCCATAAGATACCTTCCCCCAGAAATTGGTTGCCTTAATAATTTGGAGGATTTGGACCTTTCGTTCAACAAGATGAAGAGCCTGCCCACCGAGATTAGTTATTTAAGCGCCTTGATATCACTGAAAGTTGCTAATAATAAATTGGTGGAACTACCATCAGGCTTGTCTTCTCTGCAAAGGTTGGAGAATTTGGACCTATCAAATAATAGGTTGACGTCGTTGGGATCTCTTGAGCTTGTCTCAATGCATAACCTTCAGAACTTAAATCTTCAGTACAATAAGCTTCTCAGTTGTTGTCAAATACCCTCATGGATATGCTGCAATTTGGAAGGAAATGGCAAAGATGCATGCAATGATGAATTCATCAGCTCTTCAGTTGAAATGGATGTATTGGAAACTACCAATCAAGAGATTGATGAAAGCATCTGCTGTAATGGCTCTCCTAATACCTCATCAAGTACTTTAACTGGGCCATCATCGAACAGTCGATGTTTTGTGGCAAGGATGTCTCAGAAGGGGTGGAAGCGAAGATATTATTTGCAACAGAGAGCACGTCAAGAGCGTTTAAACAATAGTAGGAAGTGGAAAAGTGAAGACCATGCTGAGGTGTTGACCATCAAGGCAGCGGAAAAATGTGAACATGGAAAACTAGCTGTTCTTCACCCTGAATCTCTTGCAGAACATGCACCAGACATTGTGGTTCTAGATAATGATGATAAACAGTTACTTTCTGAAGAAGCTGAGAGTGAGAATTTGCTTAACAGTGTTGAGGATGCTGAAAGTGGTCCAAGAAAAGGGTCATGTGCTGTCCTTGATTCCATTGCAATAAATCAGGGGAGTAAAAGTGAATGTAATGATGATGATGCATCATTATCCTCTCTATCAAAAGGAGCCAGTGAGAAAAATGAAGGCTCATCTTCAGAGGTATCTAAAAGTACACCAAAGTCGAAAAGGCATTCTGATAGGGATCTTGATAACCCCAAACCATGCAAGGCTCGGAGACCAGTTAATGAACACTCAAATTTGTCTTGTAAATATAGTAAAATTTCATACTGTAACATTGAGGACCGCCTACCAGATGGCTTTTATGATGCAGGGCGTGATCGGCCCTTCATGCCATTGACGGTTTATGAGCAAAATTTTCATTTTGATTCACGTGAAGTCATTCTTTTGGACAGGGAAAGGGATGAAGAGTTAGATGCAATCACTCTGTCTGCGCAAGCGTTGGTGTCCCAGTTGAAGCAGCTAAATGGTTTAACGAAAGAAAGGAAACAGGTTACTGATGATAACCTGCAGATTGCGTCATTGCTTGCTCTTTTTGTATCAGATCATTTTGGAGGCAGTGATAAGAGTGCTCTTATTGAGAGGACACGAAAATCCGTATCTGGTTCAAACTATCAAAAGCCGTTTGTTTGCTCCTGCTCAACTGGAAACCGTAACAATATTAGTACATCTAACAAACAAAATTTGGACACTGTAGAAGATATTGTTGTCTCTGATCTCTGTGAGAAATCTCTTCGTTCTATCAAAGCAAGACGCAATTCCATCATAGTTCCCATAGGGACTTTGCAGTTTGGTGTATGTAGACATCGTGCAGTGCTCATGAAGTATCTATGTGATCGAATGGAGCCTCCAGTTCCTTGTGAGCTTGTTAGGGGCTACTTGGATTTTTTACCACATGCTTGGAACGTTGTTCATACTAAGAGGGGTGATTCATGGGTTCGCATGATAGTTGATGCTTGTCGTCCACATGATATTAGAGAAGAGACAGACCCAGAATATTTTTGCAGATACATTCCTCTCAGTCGGATTAATGTTCCTCTTTCAACTCAAAGCACTCCTGTTACAGGAGGTTCTTTTCCTTCTCTGTCCGCATGTGATGAAATTGCAAATGCACCCTCTAGTTCACTCATCCAGTGCAAATTTGGATCAGTTGAGGCTGCAGCAAAGGTGCGTATTTTAGAAGTATGTGGTGATTCCGTGGATGAAGTTAGGAATTTTGAGTACTGTTGTCTAGGGGAAGTGAGAATTTTAGGTGCTCTTAAACACTCCTGCATAGTAGAGATTTATGGGCATCAGATATCTTCCAAGTGGATTCCTGCATCAGATGGAAATCTGGAGCACCGTGTATTGCAGTCTGCAATTTTGATGGAGCATGTAAAAGGGGGATCTTTGAAGAGTTATTTAGAGAAGCTATCAGAAGCTGGTGAGAAGCATGTCCCAGTGGAGTTGGCATTGTGTATTGCTAGAGATGTTGCATCTGCATTGGCAGAGCTGCATTCAAAACATATTATTCATCGTGACATAAAAAGTGAAAACATTTTGATTGATTTGGATAAGAAGAGAGCTGATGGAACACCTGTCGTGAAGCTTTGTGATTTTGATAGAGCAGTACCTCTTCGGTCTTTCTTACATTCCTGCTGCATTGCACACATTGGAATACCTCCACCTGATGTTTGTGTTGGAACACCTCGTTGGATGGCACCTGAGGTGCTGCGGGCAATGCATAAACGGGAGATATATGGGCTGGAAGTGGATATTTGGTCATATGGGTGTCTCCTCTTGGAACTATTGACTTTGCAAGTTCCTTATTTTGAGTTATCAGAATCGCAGTTTCATGATCAACTTCAGATGGGAAAACGACCACAACTGCCAGAGGAATTGGAAGCATTGGGTTCACAGGAGCCTGAAATGGCTCAATCTGGCAAAGAGGAGGGACCAGAGACTGAAGTAGAAAAACTAGGATTCCTAGTTGATTTGGTCCGCTGGTGCACTAAGGGAAACCCGACTGACCGTCCAACGGCTGAAAACCTCTACAAAATGTTGCTCACACAAACAAGAACTTTCACCAGTTCAAGAAGTTAG 3354 0.4273 MQLPDSGEVVSVTEPVKDDQSKPLDAASTGENNADDQSILDVSGRNLEFSVLENCESTVEGLYLYKNVFNLIPQRLGELGRLKMLKFFANEINLFPPEFRNLVGLECLQVKLSSPGLNGLPLHKLRGLKELELCKVPPRPSAFPLLSEIAGLKCLTKLSVCHFSIRYLPPEIGCLNNLEDLDLSFNKMKSLPTEISYLSALISLKVANNKLVELPSGLSSLQRLENLDLSNNRLTSLGSLELVSMHNLQNLNLQYNKLLSCCQIPSWICCNLEGNGKDACNDEFISSSVEMDVLETTNQEIDESICCNGSPNTSSSTLTGPSSNSRCFVARMSQKGWKRRYYLQQRARQERLNNSRKWKSEDHAEVLTIKAAEKCEHGKLAVLHPESLAEHAPDIVVLDNDDKQLLSEEAESENLLNSVEDAESGPRKGSCAVLDSIAINQGSKSECNDDDASLSSLSKGASEKNEGSSSEVSKSTPKSKRHSDRDLDNPKPCKARRPVNEHSNLSCKYSKISYCNIEDRLPDGFYDAGRDRPFMPLTVYEQNFHFDSREVILLDRERDEELDAITLSAQALVSQLKQLNGLTKERKQVTDDNLQIASLLALFVSDHFGGSDKSALIERTRKSVSGSNYQKPFVCSCSTGNRNNISTSNKQNLDTVEDIVVSDLCEKSLRSIKARRNSIIVPIGTLQFGVCRHRAVLMKYLCDRMEPPVPCELVRGYLDFLPHAWNVVHTKRGDSWVRMIVDACRPHDIREETDPEYFCRYIPLSRINVPLSTQSTPVTGGSFPSLSACDEIANAPSSSLIQCKFGSVEAAAKVRILEVCGDSVDEVRNFEYCCLGEVRILGALKHSCIVEIYGHQISSKWIPASDGNLEHRVLQSAILMEHVKGGSLKSYLEKLSEAGEKHVPVELALCIARDVASALAELHSKHIIHRDIKSENILIDLDKKRADGTPVVKLCDFDRAVPLRSFLHSCCIAHIGIPPPDVCVGTPRWMAPEVLRAMHKREIYGLEVDIWSYGCLLLELLTLQVPYFELSESQFHDQLQMGKRPQLPEELEALGSQEPEMAQSGKEEGPETEVEKLGFLVDLVRWCTKGNPTDRPTAENLYKMLLTQTRTFTSSRS* 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0633 1117 SUPERFAMILY Protein kinase-like (PK-like) 829 1106 IPR011009 -
Vvi5g0633 1117 Pfam Ethylene-responsive protein kinase Le-CTR1 665 730 - -
Vvi5g0633 1117 SUPERFAMILY L domain-like 57 272 - -
Vvi5g0633 1117 PRINTS Leucine-rich repeat signature 221 234 - -
Vvi5g0633 1117 PRINTS Leucine-rich repeat signature 178 191 - -
Vvi5g0633 1117 SMART LRR_typ_2 198 220 IPR003591 -
Vvi5g0633 1117 SMART LRR_typ_2 79 101 IPR003591 -
Vvi5g0633 1117 SMART LRR_typ_2 221 244 IPR003591 -
Vvi5g0633 1117 SMART LRR_typ_2 175 197 IPR003591 -
Vvi5g0633 1117 SMART LRR_typ_2 245 271 IPR003591 -
Vvi5g0633 1117 SMART LRR_sd22_2 245 261 - -
Vvi5g0633 1117 SMART LRR_sd22_2 221 242 - -
Vvi5g0633 1117 SMART LRR_sd22_2 175 200 - -
Vvi5g0633 1117 ProSiteProfiles Leucine-rich repeat profile. 223 244 IPR001611 GO:0005515
Vvi5g0633 1117 SMART serkin_6 786 1107 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0633 1117 MobiDBLite consensus disorder prediction 442 500 - -
Vvi5g0633 1117 FunFam Leucine-rich repeat protein kinase family protein 832 1111 - -
Vvi5g0633 1117 Gene3D Ribonuclease Inhibitor 28 137 IPR032675 -
Vvi5g0633 1117 ProSiteProfiles Protein kinase domain profile. 772 1113 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0633 1117 FunFam At1g04210 113 298 - -
Vvi5g0633 1117 MobiDBLite consensus disorder prediction 475 498 - -
Vvi5g0633 1117 SMART LRR_bac_2 175 194 - -
Vvi5g0633 1117 SMART LRR_bac_2 221 240 - -
Vvi5g0633 1117 SMART LRR_bac_2 198 217 - -
Vvi5g0633 1117 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 105 1111 - -
Vvi5g0633 1117 Gene3D Ribonuclease Inhibitor 141 288 IPR032675 -
Vvi5g0633 1117 ProSiteProfiles Leucine-rich repeat profile. 177 198 IPR001611 GO:0005515
Vvi5g0633 1117 MobiDBLite consensus disorder prediction 1 37 - -
Vvi5g0633 1117 ProSitePatterns Serine/Threonine protein kinases active-site signature. 927 939 IPR008271 GO:0004672|GO:0006468
Vvi5g0633 1117 MobiDBLite consensus disorder prediction 442 474 - -
Vvi5g0633 1117 Pfam Protein kinase domain 834 1103 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0633 1117 Gene3D Transferase(Phosphotransferase) domain 1 795 1116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0633 Vvi-Chr5 5824109 5839058 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0633 837 1101 MAP Kinase Kinase Kinase AT1G63700 29.963 3.75e-22 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-2 Vvi5g0633 Pkinase 4.9e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0633 - - vvi:100249467 2193.7