Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0627 ATGCTTCTTTATAAGAACTCCTTTGAGCAAACTTACTATGACATTCTCTCTGTCAAGGAAGATGCAAGCTATGAAGAGATCCGTGGATGCTACCGATCTGCCATCCTCAATTCCCATCCTGATAAATTGCAAAAGACAACAGAGACATCCAATACTGATCCTGAGTCAGGAGATAGATTCCTGAAAATACAGAAGGCTTGGGAAACCCTCAGTGATCCAAGGTCACGAGCTGTTTATGATAGTGGGCTGCAAGCTTCAAGACAGGATACAGCCACAGCTGAAGATCTCAGCTTAGAGGATATGACAATTGAAGATGATGGCAAAGTATTAGAGCTCTTTTACCAGTGTCGCTGCGGTGATTACTTCTCTGTTGATTCGTCTGAATTGGGGGAAATGGGGTATGCTGTGTTTAGGGACGGAAGCAAGATCTCTTTACAGACACCAGATTCTTTGCCCGCATCGTTTATTCTTCCTTGTGGGTCTTGTTCTCTAAAAGTCCGCCTATTGATTAACGCAGATACTGCAGTAGTAGTTTCTGATAATCTGTAA 549 0.4299 MLLYKNSFEQTYYDILSVKEDASYEEIRGCYRSAILNSHPDKLQKTTETSNTDPESGDRFLKIQKAWETLSDPRSRAVYDSGLQASRQDTATAEDLSLEDMTIEDDGKVLELFYQCRCGDYFSVDSSELGEMGYAVFRDGSKISLQTPDSLPASFILPCGSCSLKVRLLINADTAVVVSDNL* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0627 182 FunFam DNAJ heat shock N-terminal domain-containing protein-like 86 174 - -
Vvi5g0627 182 Gene3D DnaJ domain 2 85 IPR036869 -
Vvi5g0627 182 Pfam CSL zinc finger 95 169 IPR007872 -
Vvi5g0627 182 SMART dnaj_3 10 75 IPR001623 -
Vvi5g0627 182 Gene3D DPH Zinc finger 86 181 IPR036671 -
Vvi5g0627 182 ProSiteProfiles dnaJ domain profile. 11 83 IPR001623 -
Vvi5g0627 182 PRINTS DnaJ domain signature 13 31 IPR001623 -
Vvi5g0627 182 PRINTS DnaJ domain signature 31 46 IPR001623 -
Vvi5g0627 182 PRINTS DnaJ domain signature 55 75 IPR001623 -
Vvi5g0627 182 ProSiteProfiles DPH-type metal-binding (MB) domain profile. 92 171 IPR007872 -
Vvi5g0627 182 FunFam DNAJ heat shock N-terminal domain-containing protein-like 2 86 - -
Vvi5g0627 182 PANTHER DPH3 HOMOLOG-RELATED 11 172 IPR044248 GO:0017183|GO:0046872
Vvi5g0627 182 Pfam DnaJ domain 11 80 IPR001623 -
Vvi5g0627 182 CDD DnaJ 11 72 IPR001623 -
Vvi5g0627 182 SUPERFAMILY Chaperone J-domain 7 83 IPR036869 -
Vvi5g0627 182 SUPERFAMILY CSL zinc finger 92 173 IPR036671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0627 Vvi-Chr5 5773022 5773570 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0627 12 81 C2H2 Transcription Factor Family AT1G74250 41.429 2.20e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0627 K17867 - vvi:100258040 365.54