Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0624 ATGAATCCCCCGGTTAGAGGAAGCAGTTCATCTTACCCCGATGAGCCTCTCATCGCTGCTTCTCAACGACCGCAACCAATGGAGGGACTTCATGATATAGGCCCTCCACCTTTTCTCAACAAAACCTATGACCTTGTCGACGACCCAAGCACGGATAGTATAGTGTCTTGGAGTATAGGTAACAACAGCTTTGTTGTATGGGATCCTCAGATCTTTGCCGGGAATCTTCTTCCGAGATATTTCAAGCATAACAATTTCTCAAGCTTTGTTAGGCAACTCAACACTTATGGTTTTAGAAAGGTTGATCCAGACAGATGGGAGTTTGCAAATGAAGAGTTTCTCAGAGGACAAAAGCCTCTGTTGAAGAAAATCAAGAGGAAGAAGGCACTTCAGCCTTATACCTCACAGCAAGCTGTAGGTCCGTCAGTTGAAGTTGAGCGATTTGGGTTAGATGGGGAAGTTGATCACAGGAGGCGTGACAAGGAGGTTCTGATGATGGAGCTGGTGAAGCTCAGAAGGCAACAACAGGATACAAGAGCTTACCTCCAAGCAATGGAGCAAAGGATCAAAGGGACAGAGTTGAAACTGAAACAGATGATGAATTTCTGGGCAAAAGTTATAAAGAATCCCAGTATCATACAGAAATTGGTCCAACAAAGCAGAACAAAAGAACTTGAATCAGCATTAACTAAAAAGAGGAGACTGATCGATGAAGTGCCTACCTATGTGGAAGCCCCGGGGGAAGGAACTTCAGTCAAAATTGAACCCCACGACTATGATGACATTTCAGCATTTGAAGTTTCAGAGCTGGATACACTTGCTATGGACATGGAGGGACTAAGCAAAACTGGGAAGAAGCCAGGGAACGAACAGATAGAGAAAGAAGAGATGAAGCTTGAAAGTGGAAATAAAGCACTGGATATAGGAATATGGGAAGAGTTTTTGAATGAGGAGCTTGAAGGAGATATGGGTTTACTGGGTACTGTTGGAGGGGATGATGAGGAAGACGTGAATGTATTGGTTGACCAGCTGTGTGACTTGGTTTCCAGTCCAGTGTAG 1059 0.4429 MNPPVRGSSSSYPDEPLIAASQRPQPMEGLHDIGPPPFLNKTYDLVDDPSTDSIVSWSIGNNSFVVWDPQIFAGNLLPRYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEEFLRGQKPLLKKIKRKKALQPYTSQQAVGPSVEVERFGLDGEVDHRRRDKEVLMMELVKLRRQQQDTRAYLQAMEQRIKGTELKLKQMMNFWAKVIKNPSIIQKLVQQSRTKELESALTKKRRLIDEVPTYVEAPGEGTSVKIEPHDYDDISAFEVSELDTLAMDMEGLSKTGKKPGNEQIEKEEMKLESGNKALDIGIWEEFLNEELEGDMGLLGTVGGDDEEDVNVLVDQLCDLVSSPV* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0624 352 MobiDBLite consensus disorder prediction 1 26 - -
Vvi5g0624 352 SUPERFAMILY "Winged helix" DNA-binding domain 34 127 IPR036390 -
Vvi5g0624 352 Gene3D - 31 128 IPR036388 -
Vvi5g0624 352 Coils Coil 168 188 - -
Vvi5g0624 352 ProSitePatterns HSF-type DNA-binding domain signature. 77 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi5g0624 352 SMART hsfneu3 34 127 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi5g0624 352 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 24 240 IPR027725 -
Vvi5g0624 352 FunFam Heat shock transcription factor 1 31 128 - -
Vvi5g0624 352 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi5g0624 352 PRINTS Heat shock factor (HSF) domain signature 89 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi5g0624 352 PRINTS Heat shock factor (HSF) domain signature 38 61 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi5g0624 352 Pfam HSF-type DNA-binding 38 127 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0624 Vvi-Chr5 5751191 5752716 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0624 24 350 HSF AT3G22830 49.171 4.12e-106 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vvi5g0624 HSF_DNA-bind 3.3e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0624 K09419 - vvi:100264870 705.671