Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0615 ATGGCGGGGACGTTGCCAGGAGTGGGGGTGGGTTCAAGGAGGATGAGCCACCACCGCCACCGTCAAGATGATCCTCTTGTATTCCGAGAACCACCCCCTCTCAGAGAACGCCTCCAACATTCCACCACCGTCACCATGGGTGAAACTGCTCTCATGGCTCGCCAGAGGCTTGATCGCAAGCTTGCCCACTACCGTGCCTCTTCCAGATCAAGTAAACAAGGAGCAAATGGAAGCAGGGAGAGCAACCATAAAGAGCGCACAAAGAGAAATAGCAGCATAGGGTCAAAAATATTAGGGAGACCCTGGAAGCTGCAGCTCAACACTGGTAGTAAATCAAATGGGGAGATGTGTAGTGTTTGCTTAGAAGATTTCGAGGGAGAGCAACAGATGATGGAACTGTCCTGCTCCCACAAGTACCACTCCAACTGCCTCATGCCCTGGCTTGCTTCTCATCCCCACTGTCCCACCTGCCGCAACCCTGTTCAGTGCGCTTGA 495 0.5333 MAGTLPGVGVGSRRMSHHRHRQDDPLVFREPPPLRERLQHSTTVTMGETALMARQRLDRKLAHYRASSRSSKQGANGSRESNHKERTKRNSSIGSKILGRPWKLQLNTGSKSNGEMCSVCLEDFEGEQQMMELSCSHKYHSNCLMPWLASHPHCPTCRNPVQCA* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0615 164 ProSiteProfiles Zinc finger RING-type profile. 117 158 IPR001841 -
Vvi5g0615 164 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 55 158 - -
Vvi5g0615 164 MobiDBLite consensus disorder prediction 63 95 - -
Vvi5g0615 164 CDD RING-H2_PA-TM-RING 117 158 - -
Vvi5g0615 164 MobiDBLite consensus disorder prediction 17 36 - -
Vvi5g0615 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 163 IPR013083 -
Vvi5g0615 164 SUPERFAMILY RING/U-box 112 162 - -
Vvi5g0615 164 MobiDBLite consensus disorder prediction 1 50 - -
Vvi5g0615 164 Pfam Ring finger domain 116 158 IPR001841 -
Vvi5g0615 164 SMART ring_2 117 157 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0615 Vvi-Chr5 5689091 5689960 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0615 107 158 C3H Transcription Factor Family AT3G58720 42.308 3.77e-12 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0615 - - vvi:100261405 347.436