Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0612 ATGGGTAACTCTGATTACCACACCCCGCGTGGTGTTGCAGTTCCTCCGCCAAAGCCATTCTGTTGGGCTGTGAGGACAGCTCTCAAAGAGACTTTCTTTCCTGATGACCCTTTTAGGCAATTCAAGAACCAGCCACCTTCTAGGAAGTTTGTGCTGGGGTTACAGTACTTGATGCCAATCCTTGAATGGGCACCTCGCTACACTTTTCAGTCCTTCAAATCTGATTTAGTTGCGGGGATTACTATTGCCAGTCTTGCAGTTCCTCAGGGGATAAGTTATGCAAATTTAGCAAGCTTGCCACCCATTGTTGGATTATATTCAAGCTTTGTACCTCCACTGATCTACGCCATGTTCGGAAGCTCCAGAGATGTGGCAGTGGGGACTATAGCTGTTGCATCACTTCTCTTAACTTCCATGATTGGGGGTGTGGTTAATCCATATGAGAACCCAAAGCTTTATTTTCAGCTGGCTGTCACCGCAACCTTCTTTTCTGGAGTTCTTCAAACTGCTCTGGGATTGTTAAGGCTTGGGTTTATCGTGGACTTTCTGTCACATGCAACAATAGTGGGATTCATGGGGGGAGCAGCCACAATCGTTTGTTTGCAGCAACTAAAAGGGATGCTTGGTCTCGTTCATTTTACTCGTGGGACAGATATGGTATCTGTCCTCAAATCCGTCTTTACTCAAGTACACCAGTGGAGATGGGAAAGTGCTGTGTTGGGCTGCCTTTTCCTCTTCTTCCTCCTCCTTACCAGATATTTTAGCAAGAGAAAGCCAGCCTTCTTCTGGATAAACGCCATGGCGCCTTTGATGTCTGTAATTTTGGGAAGCATTCTAGTCTATCTGACCCATGCTGAGAAACACGGCGTCCAAGTGATTGGGCACCTGAAGAAAGGGCTGAATCCACCATCTCTGTCTGATCTGGCTTTTGGGTCACCATATCTCGTGACAGCTATCAAAACAGGAGCCGTCACTGGAATCATAGCCCTAGCTGAAGGAATTGCAGTTGGGAGAAGCTTTTCCATGTTCAAGAATTATCACATTGATGGGAATAAAGAAATGATCGCTTTTGGAATGATGAACATTGCAGGCTCTTGCACTTCTTGCTACTTGACCACAGGACCATTTTCCCGAACAGCAGTGAATTTCAATGCAGGATGCAAGTCAGCGGTATCCAACATAGTCATGGCCACAGCAGTTATGATAACCCTGTTATTCCTAACTCCGTTGTTCCATTACACTCCCCTGGTGGTGCTCTCATCCATAATCATCGCTGCCATGCTCGGCCTGATAGACTATGAGGCTGCCATCCATCTATGGAAAGTCGACAAATTCGATTTCGTTGTGTGCATGAGTGCATACATAGGTGTGGTCTTCGTCAGTGTTGAAATCGGCTTAACCATAGCGGTCACCATGTCCATGCTAAGGCTGCTGCTATCCTTGGCAAGGCCGAGGACTCACGTTCTTGGCAACATTCCCAACACGATGACATACAGAAGCATTGATCAGTACCCAAATGCGAACACTGTTCCCGGAATGCTCATTCTTCATATTGACGCCCCCATCTACTTTGCCAATTCTAACTACCTAAGAGAAAGGATCACGAGATGGATATATGAGGAGGAAGATAGGGTAAAATCCTGTGGAGAGGCCAACTTGCACTATGTCATATTAGATATGAGCGCGGTTGGTAGCATTGATACAAGTGGGATGAGCATGCTTGATGAGGTGAAGAAGGATCTTGACAAAAGGGGTCTCAAGCTTGTATTAGCAAACCCTGGAAGTGAGGTGATGAAGAAGCTAGACAAGACAGAGTTCATCCAAAACATTGGCCAAGAATGGATCTATCTGACAGTGGGAGAGGCCGTGGGAGCATGCAACTTTATGCTGCATACATGCAAGCGAACTCCCCCCACCCTCAGCATGCCTCCGGCTGTTGAACTCACTGCACAAGATAACGTGTGA 1965 0.4667 MGNSDYHTPRGVAVPPPKPFCWAVRTALKETFFPDDPFRQFKNQPPSRKFVLGLQYLMPILEWAPRYTFQSFKSDLVAGITIASLAVPQGISYANLASLPPIVGLYSSFVPPLIYAMFGSSRDVAVGTIAVASLLLTSMIGGVVNPYENPKLYFQLAVTATFFSGVLQTALGLLRLGFIVDFLSHATIVGFMGGAATIVCLQQLKGMLGLVHFTRGTDMVSVLKSVFTQVHQWRWESAVLGCLFLFFLLLTRYFSKRKPAFFWINAMAPLMSVILGSILVYLTHAEKHGVQVIGHLKKGLNPPSLSDLAFGSPYLVTAIKTGAVTGIIALAEGIAVGRSFSMFKNYHIDGNKEMIAFGMMNIAGSCTSCYLTTGPFSRTAVNFNAGCKSAVSNIVMATAVMITLLFLTPLFHYTPLVVLSSIIIAAMLGLIDYEAAIHLWKVDKFDFVVCMSAYIGVVFVSVEIGLTIAVTMSMLRLLLSLARPRTHVLGNIPNTMTYRSIDQYPNANTVPGMLILHIDAPIYFANSNYLRERITRWIYEEEDRVKSCGEANLHYVILDMSAVGSIDTSGMSMLDEVKKDLDKRGLKLVLANPGSEVMKKLDKTEFIQNIGQEWIYLTVGEAVGACNFMLHTCKRTPPTLSMPPAVELTAQDNV* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0612 654 ProSitePatterns SLC26A transporters signature. 101 122 IPR018045 GO:0008271|GO:0008272
Vvi5g0612 654 NCBIfam sulfate permease 59 622 IPR001902 GO:0016020|GO:0055085
Vvi5g0612 654 Pfam STAS domain 504 622 IPR002645 -
Vvi5g0612 654 SUPERFAMILY SpoIIaa-like 506 626 IPR036513 -
Vvi5g0612 654 PANTHER SULFATE TRANSPORTER 24 629 IPR001902 GO:0016020|GO:0055085
Vvi5g0612 654 FunFam Sulfate transporter 31 483 629 - -
Vvi5g0612 654 Gene3D STAS domain 483 628 IPR036513 -
Vvi5g0612 654 Pfam Sulfate permease family 72 452 IPR011547 GO:0016020
Vvi5g0612 654 CDD STAS_SulP_like_sulfate_transporter 504 619 - -
Vvi5g0612 654 ProSiteProfiles STAS domain profile. 503 626 IPR002645 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0612 Vvi-Chr5 5596159 5599680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0612 4 638 Inorganic Solute Cotransporters AT4G02700 65.881 0.0 860
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0612 K17471 - vvi:100244269 1286.94