Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0610 ATGAAGAACCCATATATGAGTTCAGCCCTCTGGATCATTTTCTCACTCTTCCTCTCCTTCTCTGCACCCTCTCACCAAGATTCTTATTCTCCTCCACCTCTCCCAAACCCTAGAATCCTAAATGCTTACACAGCTCTCCAAGCATGGAAACATGTGATACTCTCTGACCCCAAGAACTTTACCTCAAACTGGTGTGGCTTTGACGTCTGCAACTACAAGGGGGTCTATTGTGCTCCAGCCCCGGATGACCCTCATATCACTACGGTCGCCGGAATTGACTTGAACCATGCAGACATCGCGGGCTCTTTGCCAGAAGAGCTTGGTCTCCTCACCGACCTCGCTCTCTTTCACATCAACTCCAATCGCTTCTGTGGAACCTTGCCCGATAGTTTTCGCCATCTTCGTCTTCTTTACGAGCTCGATATTAGCAACAACCGATTCAAAGGCCAGTTTCCTTCTGTGGTTCTCTGTCTTCCTTCACTCAAATTTCTTGACATTCGGTACAATGAATTCGAGGGTGACATCCCAACGGGCCTTTTCGACTTGAAACTCGATGCTATATTCGTTAACAACAACAAGTTTAAGTCATCTCTGCCGGGAAATATCGGAAACTCCCCTGTTTCTGTTATTGTGTTTGCGAATAACAACCTTAATGGTTGCCTTCCATCGAGTTTGTCGAAAATGGCGAAAACACTCAATGAACTCATAATCACGAATGCGGGTTTAAAAGGTTGTTTATCACCAGAGATTGGGTTGTTGAAAAATGTTACAGTTTTTGATGTAAGCTCAAACGAGTTGGTAGGGCCGTTGCCGGAGACTATAGGGGAGATGAAGAGCTTGGAGCAGCTGAACGTAGCCCATAACAAACTATCCGGGGAGATTCCGGAGACCATATGCTCTTTACCTAACTTGGAGAATTTCACCTACTCCTACAATTACTTCTGCGGTGAACCACCGACATGCCTCAAGTTGCCGGCAAATGATGATCAGAAAAACTGTATACCGGATAGGCCGATGCAGAGGTCACCGGAGGAATGCGCAGCTTTCCTTGCACAACCTGTTGACTGCGGTGCCTTTGGCTGCTTACCCAGAAGTCCGCCGCCGTCGCCTCCTCCACCCTCACCCCCACTCCCACCTCCGTCATCACCTTTGTCTTATTACCACCATCCATGA 1173 0.4774 MKNPYMSSALWIIFSLFLSFSAPSHQDSYSPPPLPNPRILNAYTALQAWKHVILSDPKNFTSNWCGFDVCNYKGVYCAPAPDDPHITTVAGIDLNHADIAGSLPEELGLLTDLALFHINSNRFCGTLPDSFRHLRLLYELDISNNRFKGQFPSVVLCLPSLKFLDIRYNEFEGDIPTGLFDLKLDAIFVNNNKFKSSLPGNIGNSPVSVIVFANNNLNGCLPSSLSKMAKTLNELIITNAGLKGCLSPEIGLLKNVTVFDVSSNELVGPLPETIGEMKSLEQLNVAHNKLSGEIPETICSLPNLENFTYSYNYFCGEPPTCLKLPANDDQKNCIPDRPMQRSPEECAAFLAQPVDCGAFGCLPRSPPPSPPPPSPPLPPPSSPLSYYHHP* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0610 390 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 23 382 - -
Vvi5g0610 390 Gene3D Ribonuclease Inhibitor 205 329 IPR032675 -
Vvi5g0610 390 MobiDBLite consensus disorder prediction 365 390 - -
Vvi5g0610 390 Pfam Leucine rich repeat 114 170 IPR001611 GO:0005515
Vvi5g0610 390 FunFam Leucine-rich repeat extensin-like protein 1 43 204 - -
Vvi5g0610 390 SUPERFAMILY L domain-like 41 325 - -
Vvi5g0610 390 Gene3D Ribonuclease Inhibitor 42 204 IPR032675 -
Vvi5g0610 390 FunFam Leucine-rich repeat extensin-like protein 5 205 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0610 Vvi-Chr5 5569726 5570898 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0610 32 361 Leucine-rich Repeat extension Gene Families AT3G22800 68.882 1.38e-167 475
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0610 - - vvi:100251086 751.895