Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0609 ATGGCGGTTGGGAAGAACAAGAGGATTTCCAAGGGAAAAAAGGGAGGCAAGAAGAAGGCAGCCGATCCCTTTGCAAAGAAGGATTGGTACGACATCAAGGCTCCTTCTGTCTTCGAAGTTCGCAATGTCGGCAAAACCCTCGTTTCCCGCACCCAGGGTACCAAGATAGCTTCTGAAGGGCTCAAACATCGGGTGTTTGAGATATCACTTGCTGACCTTCAGGCTGATGAGGATCAGGCTTATAGAAAGATTCGACTGAGAGCTGAAGATGTTCAAGGGAGGAATGTTCTGACAAACTTTTGGGGAATGGATTTTACAACTGACAAGTTGAGGTCTTTGGTGCGGAAATGGCAAACATTGATTGAAGCTCATGTGGATGTGAAGACAACTGACAACTACACCTTGAGGTTGTTCTGCATTGCATTCACTAAGAAGCGTGTAAACCAGAACAAGAAGACTTGTTACGCACAATCCAGCCAAATTCGACAGATTCGACGGAAGATGAGAGAAATCATGACAAACATGGCAACATCTTGTGATCTGAAGGAATTGGTCAAAAAGTTCATTCCTGAGAGTATTGGCCGAGAGATCGAGAAGGCAACTTCAAGCATCTATCCTTTACAGAATGTGTACATTCGGAAAGTTAAGATCTTGAAAGCTCCTAAGTTTGATCTTGGAAAGCTGATGGAGGTATTTTTTTTTTTAACTCTTTTCATTTGTCTATTTTCTAATTTAACATACATAAACATTAAACCATTAAAAAAAAAAACCTGTCACCTTTTTATGCCAAATCCTGCCAAGAAGTAG 807 0.4151 MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFEVRNVGKTLVSRTQGTKIASEGLKHRVFEISLADLQADEDQAYRKIRLRAEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRLFCIAFTKKRVNQNKKTCYAQSSQIRQIRRKMREIMTNMATSCDLKELVKKFIPESIGREIEKATSSIYPLQNVYIRKVKILKAPKFDLGKLMEVFFFLTLFICLFSNLTYINIKPLKKKTCHLFMPNPAKK* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0609 268 PANTHER 40S RIBOSOMAL PROTEIN S3A 1 231 - -
Vvi5g0609 268 Pfam Ribosomal S3Ae family 16 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
Vvi5g0609 268 MobiDBLite consensus disorder prediction 1 15 - -
Vvi5g0609 268 MobiDBLite consensus disorder prediction 1 20 - -
Vvi5g0609 268 Hamap 40S ribosomal protein S1 [RPS3A]. 1 260 IPR027500 GO:0003735|GO:0005840|GO:0006412
Vvi5g0609 268 ProSitePatterns Ribosomal protein S3Ae signature. 61 73 IPR018281 GO:0003735|GO:0005840|GO:0006412
Vvi5g0609 268 SMART Ribosomal_S3Ae_2 15 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0609 Vvi-Chr5 5563292 5566596 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0609 1 231 Cytoplasmic Ribosomal Protein Gene Family AT3G04840 87.013 4.27e-144 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0609 K02984 - vvi:100249434 423.32