Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0607 ATGATTTATTTGTGTTTTCTTTACATGCAGGACTCTCCTGTCTTTAACTTCATCAACAGTCTTTCTCCTATTAAGCCTGTCAAGTCCGCACACATTGCTCAGACGTTTAACTCACTCAGTTTTGTATCCCTTCCGTCCATTTTCACTTCACCCCATGTCAGTTCCCACAAGGAATCTAGGTTCTTGAGAAGGCATAATTTCTCAGACCCGTCAAAGCCCGAGTTTTCTTCTGTAAATGGAAATAAAGTCAGTACAAATGAAGAGGTTATGGATGCCGATCAGTTGTGTGGGAACTCTGGTAAGCCACTGGAAGATTTTGATCCAAGGAGTTCCATTGGAAAAGCCTCTTTTGAGCGAAACAATGGACACTCTGAGCTTGCAATTGAGCTGCCACAGACCTTAAAATATGGCTGTGGTAGTCCTGACTGTGACCCAACACCTTGTGGGGGTACCGAGGTAGAGCTGGCAAGCAAATCAGGATCACTTGCTCCATTTTCTGAGGAGGCCTCTGAAACAGGTAGATTCAACAGTCAATTGCATTTAAAAGGAATGTGTCAGATTGAGCAAAAAAAGGAAGAGGCAGGCTGTGACTGGGAGAGTTTGATTTCAGACGCTGCAGACCTTTTAATTTTTGATTCACCTGATGACACGAGGGCTTTTAAGGGTCTAATTCAGAAATCATTAGATCCTGGGACAAGTGTTTGTGCTTCTCTTGGATCGCAGTTTTCACAGGATGATGTTAGTGATTTGCAGAAAAAGCAATTTGTTGGTTCAGATGATTCTGGTGAACATGAAACAGATGACCCTTCCACTCAACCTGAAGAAGCCAGCAAGCTGAATGGAATGGACCAGAAACAAGAGAACCTTGCTAATACTTCTTTCAAGGACTGCATGGGTAGCAATGCAAGTGGGGAAATGGATAATGAGGGTGGAACAAGCATTCCAGTCCCTTCTAAGACTCTTTCCAATTTGCATCGTGGTATGAGAAGACGCTGTCTAGTTTTTGAGATGGCAGGAGTTCGTAGAAAAAACATGGATGATGGTTCAAATTGTAGTTCTTCCATGTTATCACAATCTGATGGAACGTTTGTGCCTAATGACAAGCAACTAGTACCTCTTAAACCTGGGAATGATTCTTCACGACGCATTCTACCTGGAATAGGTTTGCACTTAAATGCTCTTGCTACAACTTCAAAGGACTACAACATTGTCAAGCATGAAACTTTAACTTCAGGAAGGCAGTTAATAAGTGTGCCAAGCTCCTCTGGCTCATATCTTTCTACAATAGAAGGTCAAGAACCTGTAAATAAATCTTTGGCTTTAAACTCTTCAGACAGAGAGACAGACCCTGCTGAAAATGGATTTCAGGCTCTGGAAGATGCTTCTCAGGCATCTGCATATGCGATTAGTGAAGAGCTCAATCAGAGTAGCCCCAAAAAAAAGAGGCGTAGGTTGGAACATGGTGGAGAAACTGAGGGCTGCAAGCGCTGTAACTGCAAGAAATCTAAATGCTTGAAGCTTTACTGTGAATGCTTTGCTGCTGGTGTCTACTGTGTAGAGCCATGTTCATGCCAAGAATGCTTTAACAAACCTATTCATGAAGATACTGTTCTTGCAACTCGCAAGCAGATCGAATCTCGGAATCCACTAGCATTTGCTCCCAAAGTGATTAGGAGCTCTGATTCTTTGCCGGAAGTTGGGGATGAACCTAGCAAAACTCCAGCTTCAGCACGACACAAAAGAGGATGCAACTGCAAGAAATCAAGTTGCCTAAAGAAATATTGCGAATGCTATCAGGGTGGTGTTGGATGCTCCATTAACTGCCGGTGTGAAGGGTGTAAGAATGCATTTGGTAGAAAGGACGGTTCTGCTCTTATAGGAATGGAAGCAGAACTAGAAGAAGAAACAGAGACATTAGAGAAGAGTGTGGTGGACAAGAATTTGCAGAAATCAATTGTACAGAATGATGAAGAATATCTGGATTCTGCTCTTCCAGTGACACCATTGCGCACTTGCAGGTTTGATTCTCTCAAACAATTTTTGGCCAATGAAGTTGACAGTCATTATTATGATTTTCTAAAAGGACATTTTGTATGCCAGACAACCATCTCAATTGTCATTTCCCTCAAAGACCAAACTACCACGATCGTCTTTTCTCACTATTGGGTCCTCATCTGGGTTGCATACTAG 2190 0.4247 MIYLCFLYMQDSPVFNFINSLSPIKPVKSAHIAQTFNSLSFVSLPSIFTSPHVSSHKESRFLRRHNFSDPSKPEFSSVNGNKVSTNEEVMDADQLCGNSGKPLEDFDPRSSIGKASFERNNGHSELAIELPQTLKYGCGSPDCDPTPCGGTEVELASKSGSLAPFSEEASETGRFNSQLHLKGMCQIEQKKEEAGCDWESLISDAADLLIFDSPDDTRAFKGLIQKSLDPGTSVCASLGSQFSQDDVSDLQKKQFVGSDDSGEHETDDPSTQPEEASKLNGMDQKQENLANTSFKDCMGSNASGEMDNEGGTSIPVPSKTLSNLHRGMRRRCLVFEMAGVRRKNMDDGSNCSSSMLSQSDGTFVPNDKQLVPLKPGNDSSRRILPGIGLHLNALATTSKDYNIVKHETLTSGRQLISVPSSSGSYLSTIEGQEPVNKSLALNSSDRETDPAENGFQALEDASQASAYAISEELNQSSPKKKRRRLEHGGETEGCKRCNCKKSKCLKLYCECFAAGVYCVEPCSCQECFNKPIHEDTVLATRKQIESRNPLAFAPKVIRSSDSLPEVGDEPSKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSINCRCEGCKNAFGRKDGSALIGMEAELEEETETLEKSVVDKNLQKSIVQNDEEYLDSALPVTPLRTCRFDSLKQFLANEVDSHYYDFLKGHFVCQTTISIVISLKDQTTTIVFSHYWVLIWVAY* 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0607 729 SMART CXC_2 492 533 IPR033467 -
Vvi5g0607 729 SMART CXC_2 578 619 IPR033467 -
Vvi5g0607 729 MobiDBLite consensus disorder prediction 294 320 - -
Vvi5g0607 729 MobiDBLite consensus disorder prediction 255 272 - -
Vvi5g0607 729 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 581 616 IPR005172 -
Vvi5g0607 729 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 495 530 IPR005172 -
Vvi5g0607 729 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 10 677 IPR044522 GO:0003700
Vvi5g0607 729 ProSiteProfiles CRC domain profile. 493 618 IPR005172 -
Vvi5g0607 729 MobiDBLite consensus disorder prediction 255 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0607 Vvi-Chr5 5539037 5544807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0607 9 682 CPP Transcription Factor Family AT3G22780 42.500 8.32e-148 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Vvi5g0607 TCR 1.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0607 - - vvi:100261336 1340.1