LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi5g0606	ATGATGGATTTGAAAACCACGGAGGAAATTGGAGGAGCTATGATTGCTGAGAAATCGGATTGCAAAGAAAGCAGTACGGGCTCGAAGGTGAAGGGTACAGGAAGCCTTAGTAATAAGGATAAGATTTTTAGAGCGGATAAAATTGATCTGAAAAGCTTGGATATACAGTTGGAGAAGCACTTGAGTAGGGTTTGGTCGAGAAGCATCGACTCCCAAAGGCCTAAAGAAGAGTGGGAGATAGATTTATCTAAATTGGATATAAAGCATGTTGTGGCTCATGGGACATATGGTACAGTCTACCAGGGTACTTACGATAACCAAGATGTTGCAGTGAAGGTATTAGACTGGGGAGAGGATGGCATTCCCACAACTGCTGAAACTGCTGCTTTGCGGGCATCATTTCGGCAAGAGGTTGCTGTTTGGCACAAGCTTGACAATCCAAATGTTACGAAGTTTATTGGAGCTTCAATGGGAACCTCAAATCTTAAGGTTCCCACTCAGAGCCTTCCGCTTGCTGGTGATAGGTTTCCTACTCGAGCATGTTGTGTTGTTGTGGAATATCTCCCGGGTGGGACGCTAAAACAGTACTTGATAAGGAATAGGCGTAAAAAACTGGCCTTTAAGATTGTAATTCAACTTGCCTTGGATCTCTCCAGAGGTTTGAGCTACCTGCATTCCAAGAAGATTGTGCATCGTGATGTCAAAAGTGAAAATATGTTACTAGATGCACAAAGAACGTTAAAAATTGCTGATTTTGGTGTTGCTCGTGTTGAAGCTCAAAATCTAAGGGAAATGACCGGTGAAACTGGTACTCTTGGGTACATGGCCCCAGAGGTCCTCGATGGCAAGCCTTACAATAGAAGATGTGATGTCTACAGCTTTGGCATATGTTTATGGGAAATCTACTGCTGTGATATGCCTTATCCAGATCTTAGCTTTGCTGAAGTTTCATCAGCAGTTGTTCGACAGAATTTGCGGCCAGAAATCCCCAGATGTTGCCCGAGTTCTCTAGCAAACATAATGCGAAAATGCTGGGACGCAAATGCAGAAAAACGGCCTGACATGAATGAGGTGGTGAAGATGTTGGAAGCAATTGATACAAGCAGAGGAGGAGGGATGATACCTGAAGACCAGACTCCAGTCTGTTTCTGCTTCAGCAATGTCCGTGGTCCATAA	1176	0.4396	MMDLKTTEEIGGAMIAEKSDCKESSTGSKVKGTGSLSNKDKIFRADKIDLKSLDIQLEKHLSRVWSRSIDSQRPKEEWEIDLSKLDIKHVVAHGTYGTVYQGTYDNQDVAVKVLDWGEDGIPTTAETAALRASFRQEVAVWHKLDNPNVTKFIGASMGTSNLKVPTQSLPLAGDRFPTRACCVVVEYLPGGTLKQYLIRNRRKKLAFKIVIQLALDLSRGLSYLHSKKIVHRDVKSENMLLDAQRTLKIADFGVARVEAQNLREMTGETGTLGYMAPEVLDGKPYNRRCDVYSFGICLWEIYCCDMPYPDLSFAEVSSAVVRQNLRPEIPRCCPSSLANIMRKCWDANAEKRPDMNEVVKMLEAIDTSRGGGMIPEDQTPVCFCFSNVRGP*	392

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi5g0606	391	PRINTS	Tyrosine kinase catalytic domain signature	333	355	IPR001245	GO:0004672\|GO:0006468
	Vvi5g0606	391	PRINTS	Tyrosine kinase catalytic domain signature	223	241	IPR001245	GO:0004672\|GO:0006468
	Vvi5g0606	391	PRINTS	Tyrosine kinase catalytic domain signature	185	198	IPR001245	GO:0004672\|GO:0006468
	Vvi5g0606	391	PRINTS	Tyrosine kinase catalytic domain signature	289	311	IPR001245	GO:0004672\|GO:0006468
	Vvi5g0606	391	Pfam	Protein tyrosine and serine/threonine kinase	86	362	IPR001245	GO:0004672\|GO:0006468
	Vvi5g0606	391	FunFam	Serine/threonine-protein kinase HT1	188	373	-	-
	Vvi5g0606	391	FunFam	Kinase suppressor of Ras 1	74	169	-	-
	Vvi5g0606	391	Gene3D	Transferase(Phosphotransferase) domain 1	188	373	-	-
	Vvi5g0606	391	CDD	STKc_MAP3K-like	91	362	-	-
	Vvi5g0606	391	SUPERFAMILY	Protein kinase-like (PK-like)	65	362	IPR011009	-
	Vvi5g0606	391	SMART	serkin_6	85	365	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi5g0606	391	ProSiteProfiles	Protein kinase domain profile.	85	365	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi5g0606	391	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	63	365	-	-
	Vvi5g0606	391	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	229	241	IPR008271	GO:0004672\|GO:0006468
	Vvi5g0606	391	Gene3D	Phosphorylase Kinase; domain 1	74	168	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi5g0606	Vvi-Chr5	5521922	5527706	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi5g0606	34	391	MAP Kinase Kinase Kinase	AT3G22750	78.830	0.0	611

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Vvi5g0606		PK_Tyr_Ser-Thr	4.1e-60	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi5g0606	-		-	vvi:100259653	792.727