Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0595 ATGGCTGCTACTGGGTGGGATGATGAGTGCTCTGTCATTGGAGACAAAGGTGAAATTGGGTTTATTGATTTTGAGAATGATGCATCCGTGTGTGATTACAACCCGAGTGAAGAAGGTCCAGTTGTTGTTTCTGTCCCATTTGCCTTCAAAGGGAAGCCTAAATCAATATTCGTGGGGGAAACTGCTACTGACTGTGTAACCTTAGAGAACACCACTAGTGAACCTGTGGAACTCTGGGCAGTAAGAATATTTGCATCCACTCCTGAGGACTCATTCACAGTTTCTTTAATGGAACCACCATCAGCAGGTGTAGACATCAAATACATTCAAGAATTTCTGGAGTCTTTTTGCTTGGAAGACAGAGTGCTTCAGCCCGGGGAAACTTTGACTGTGTGGGTATCTTGCAAGCCAAAGGAAATTGGCCTGCACACATCGGTTGTGCACTTTGATTTGGGGTCAGACAGGATAGAGCGGGTGATTTTCCTTTTGGCTGAAGATAGGGTTTCACAATCTTTGGCCCCAAACAAGCCATATTCAAGAGGCTCAAGAAAGAAGGTGTTTAATGTGCAGGAATATGTTGTGGGTTCACGACCTGCAAGACCGAATACCCGAAGTTTCAGATATAGGCTTCCTCAATATGTAATTCCAAATGATGTTAGAGAATTAGTGGAGGGTAAGCAGATCCCTGATACCATCTTAGAAGGCCTAACAAGAGACAATTATGAATCTTACTTCAAAACTTTACTGATCATGGAAGAAATTCGCATGGAGGAAGACATGAGGAGCTATGACATGGAGCGTGTGACTATGAGGAGGAAGGGGACGCAATTCTTGACCCTTGAGGTCCCTGGCCTGGCTGAGAAAAGACCTTCACTTGTTCATGGGGATTACATTTTTGCCAAGCTTGCCTATGAAGATGAAAATGATTTGAGTCCTCCATATCAGGGTTTCATCCATCGTGTTGAGGCTGAACAGGTGTACTTGGGTTTTGCCAAAGAATTCATCTGGCATCATACGGATGAAAGTCTCTACAATGTAAGGTTCACTTACAATCGAGTGAATATGAGAAGATTATATCAGGCTATAGACTCTGCAAAAGGGTTAGAGATGGATCTCCTCTTTCCTTCTGATTCTAGAAGGAGACTGATCAAAGCAACTCACATGGTCCCTATATCTTTTAATCTCAATGAGGAGCAGATTTTTTCAATTAAAATGATACTTGGCTGCAGAGGGGCACCACCTTATGTGATCCATGGCCCTCCAGGTACAGGTAAGACTAAGACAATGGTGGAAGCAATCCTCCAGCTCTATTTGACTCAAAAGAATACTCGCATTCTAGTCTGTGCACCTTCAAATAGTGCTGCAGACCACTTATTAGAACGACTCCTTGCTGAGAAGGCTGTGGAAGTACAAGGGAATGAGATATTCAGACTAAATGCAACTTCTCGCCCTTATGAGGATATGAATCCTGACTTCATTCGTTTTTGCTTCTCTGAAGACTTGATCTTCAAGTGTCCTCCACTCAATGACCTCAAGCGCTATAGGATAATTATTTCAACTTACATGAGTGCCGCTCTCCTTTATGCAGAAGGTGTCAAGCGGAGCCACTTCTCTCACATTTTATTGGATGAGGCTGGCCAAGCTTCTGAGCCAGAAACGATGATTCCTCTATCCCACCTTTGCCAGAGGAAAACAGTTGTTGTTCTTGCTGGAGACCCAATGCAACTGGGTCCTGTAATTTACTCCAAAGATGCAGAGACCTACTGCTTGGGAAAATCATACTTGGAGAGGCTTTTTGAATGTGAGTTTTACCACAAGGAGGATGAAAACTATGTAACCAAATTAGTTAGAAACTACCGATGTCACCCAGAAATCCTACATCTTCCCTCACAGCTGTTTTATAAAGGGGAACTGATCCCGTGCAAAGATGATAAAAGTTCCTCCATGACTTGGGCTGAAATCCTTCCTAACAGGGACTTTCCTGTTCTTTTCATTGGCGTCCAAGGCTATGATGAAAGGGAAGGAAGCAACCCATCGTGGTTTAATAGGACTGAGGCAAGTAAGGTGGTGGAGATCATTAAGAAGCTTACTATAAGCCAGGATCTGAGAGAGGAAGATATTGGGGTAATAACACCATATAGGCAGCAGGTACTCAAATTAAAGAAGGCCCTGGAAGGTGTTGATATGCCTGCTATCAAGGTTGGCAGTGTTGAGCAATTTCAAGGACAAGAGAGGGAAGTTATTATTATATCTACCGTCCGATCAACAATTAAACACAATGAGTTTGACAAAAACCACTGTTTGGGATTTTTGAGCAATCCCAGAAGGTTTAATGTGGCTATTACCCGAGCTAAATCGTTGCTTATTATTATTGGAAATCCACACATTATCAGCAAGGATTTATATTGGAACAAGATTTTATGGCATTGCTCAGACAATGACTCCTACCAGGGCTGTGCTCTTCCTGAGAGGCAGGATTTTGTTGACAAGGAACCTGTGCAGTTCAGCTTCAACCATGAAGAAGAGAACCCTCAACCCTCCAATGAAGTTGAAAGGGGTGAAGAGCCCTTTCAAGCAGAAGAGATCCCTAAACCTGTTAAGGATGAAGCTGAATGGTCTGATGGTTGGAAGTAA 2634 0.4309 MAATGWDDECSVIGDKGEIGFIDFENDASVCDYNPSEEGPVVVSVPFAFKGKPKSIFVGETATDCVTLENTTSEPVELWAVRIFASTPEDSFTVSLMEPPSAGVDIKYIQEFLESFCLEDRVLQPGETLTVWVSCKPKEIGLHTSVVHFDLGSDRIERVIFLLAEDRVSQSLAPNKPYSRGSRKKVFNVQEYVVGSRPARPNTRSFRYRLPQYVIPNDVRELVEGKQIPDTILEGLTRDNYESYFKTLLIMEEIRMEEDMRSYDMERVTMRRKGTQFLTLEVPGLAEKRPSLVHGDYIFAKLAYEDENDLSPPYQGFIHRVEAEQVYLGFAKEFIWHHTDESLYNVRFTYNRVNMRRLYQAIDSAKGLEMDLLFPSDSRRRLIKATHMVPISFNLNEEQIFSIKMILGCRGAPPYVIHGPPGTGKTKTMVEAILQLYLTQKNTRILVCAPSNSAADHLLERLLAEKAVEVQGNEIFRLNATSRPYEDMNPDFIRFCFSEDLIFKCPPLNDLKRYRIIISTYMSAALLYAEGVKRSHFSHILLDEAGQASEPETMIPLSHLCQRKTVVVLAGDPMQLGPVIYSKDAETYCLGKSYLERLFECEFYHKEDENYVTKLVRNYRCHPEILHLPSQLFYKGELIPCKDDKSSSMTWAEILPNRDFPVLFIGVQGYDEREGSNPSWFNRTEASKVVEIIKKLTISQDLREEDIGVITPYRQQVLKLKKALEGVDMPAIKVGSVEQFQGQEREVIIISTVRSTIKHNEFDKNHCLGFLSNPRRFNVAITRAKSLLIIIGNPHIISKDLYWNKILWHCSDNDSYQGCALPERQDFVDKEPVQFSFNHEEENPQPSNEVERGEEPFQAEEIPKPVKDEAEWSDGWK* 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0595 877 MobiDBLite consensus disorder prediction 844 877 - -
Vvi5g0595 877 CDD DEXXQc_Helz-like 395 620 IPR026122 GO:0003723|GO:0032574
Vvi5g0595 877 Gene3D - 620 822 IPR027417 -
Vvi5g0595 877 Pfam AAA domain 511 583 IPR041677 GO:0004386
Vvi5g0595 877 Pfam AAA domain 395 487 IPR041677 GO:0004386
Vvi5g0595 877 Gene3D Immunoglobulins 53 163 IPR013783 -
Vvi5g0595 877 FunFam Probable RNA helicase SDE3 620 819 - -
Vvi5g0595 877 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 390 807 IPR027417 -
Vvi5g0595 877 PANTHER CANCER/TESTIS ANTIGEN 55 115 362 - -
Vvi5g0595 877 CDD SF1_C_Upf1 621 810 IPR047187 -
Vvi5g0595 877 Gene3D - 322 607 IPR027417 -
Vvi5g0595 877 Pfam AAA domain 591 794 IPR041679 -
Vvi5g0595 877 FunFam Probable RNA helicase SDE3 345 489 - -
Vvi5g0595 877 MobiDBLite consensus disorder prediction 833 877 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0595 Vvi-Chr5 5444415 5448557 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0595 394 551 Core DNA Replication Machinery Family AT1G08840 31.902 1.18e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0595 K18422 - vvi:100247679 1767.67