Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0579 ATGGGTGGAAGAAGGGGGGATGAAGGAGGGAAGAACAAGGAAGGGGAGAGAAAGGCATCAAAGCGCCAACGTCTTGACGAAGGTCTAGCATCCTCAAGCAGTACTCAGACAACAAAGGGGCCTATGGAGGTTGAGCTTCATGAAAGTAATGGGAGCACAGCTGGGATAAAGGACAATGGACTTCACCTTTATCCAGTTCCTCTTCAAGCATCAGGCCAAGGTTTACCATATGCTCCTATAGACTGGCCCTGTCCAGGTGATGTATGCGGATGGAAGGTGGGGAGAAGAGTCACTGGTTCTGGCTATCATTTGGATAGATACTTGTATCTTCCAAGCCGTTTCAGTAAAAAGAGTTTTTCAAGCAAGGTTGCCCTTGAACAACACGTCCGAAAGGAATTCCCTGATACAGATATTGATAACTTTTTTAGGTCTTTCAGCTGGAGAGTTCTCTTTAAAAAGGCATCTTCTACAAAAGATCGTGAAGAGGACTGTCCTAGAGAGGTAGCAGCACAATCCAGGCCTGATTCCCAGTTGGAAACTGGGGGTTGTAAGGCCGGAAATAGATTGTGCAGCAGTTTGGCACTAGCAGCAAGGAACACGCATTTAGCAATGAATTGTGATATTTGCTGCACTGAACCTTCGTTCTGTCGAGATTGTTCTTGTGTTCTGTGCTGCAAGAGTATTGCCTCAAGCTATAGTTTCATTAAATGTGAAGCACCAGTGAGTGAAGGTTATATATGTGGTCATGTTGCTCACATGGACTGTGCTCTCCGATCTTACCTGGCTGGGACAGTGGGAGGGAGTATAGGGTTGGATGCTGAGTACCATTGCCGGCGTTGTGATATGAGGACAGATCTGGTTTCACATGTTGCAAGGCTTTTAAAGACCTGTGAATCAGTTGATTCTCGTGATGATATTGAGAAGATTCTAGGTGTTGGCATTTGCATCTTACGTGGCTCCCGCAAAGCAAGTGCAAAGAAGTTGCTGAATCAAATTGAATTAGCCATGACAAAGCTTAAAAGTGGGACTGCTGTTGAAGATATTTGGAAAGCGGTAGTTGACACCTTGGCTCTTCCAGCAGGATCATTTCATGGAAAGGATGCTCTTGAAGTTACAAATCCCCAAACCACTCTAGATGTTCACATAATTTCCAACCAGGGGTCTGAATCTCAAAGACTTGACGATGAGATTGATAAAGTTCTCCAGGCACTGAGAAAATCACAGGTCTCTGAATACAAGATTGCAGAGGAAAGGCTTTATGCTCAAAAGAGTCATCTTCTAACTCTGTACAAGCAGCTTGAAGAAGGCAGGTCCCAACTCTCAAGAGGCTTATCATCAGCTAGTACATCTGCCTTACTTGATGCTATTGTTAACACATCAGATCGGATAAGACAGGAGGTGAAGAAACTAAGAGACATGGAAAAAGTGGCCAAGGGTTTTGGAAAAACTCCTAAAGGAATACTAAAGGAAAACTTTACTTTAGAAGTTGAAGATTGA 1497 0.4402 MGGRRGDEGGKNKEGERKASKRQRLDEGLASSSSTQTTKGPMEVELHESNGSTAGIKDNGLHLYPVPLQASGQGLPYAPIDWPCPGDVCGWKVGRRVTGSGYHLDRYLYLPSRFSKKSFSSKVALEQHVRKEFPDTDIDNFFRSFSWRVLFKKASSTKDREEDCPREVAAQSRPDSQLETGGCKAGNRLCSSLALAARNTHLAMNCDICCTEPSFCRDCSCVLCCKSIASSYSFIKCEAPVSEGYICGHVAHMDCALRSYLAGTVGGSIGLDAEYHCRRCDMRTDLVSHVARLLKTCESVDSRDDIEKILGVGICILRGSRKASAKKLLNQIELAMTKLKSGTAVEDIWKAVVDTLALPAGSFHGKDALEVTNPQTTLDVHIISNQGSESQRLDDEIDKVLQALRKSQVSEYKIAEERLYAQKSHLLTLYKQLEEGRSQLSRGLSSASTSALLDAIVNTSDRIRQEVKKLRDMEKVAKGFGKTPKGILKENFTLEVED* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0579 498 Pfam PHD - plant homeodomain finger protein 186 315 IPR032881 -
Vvi5g0579 498 PANTHER ADAPTER PROTEIN, PUTATIVE-RELATED 43 496 - -
Vvi5g0579 498 MobiDBLite consensus disorder prediction 1 25 - -
Vvi5g0579 498 MobiDBLite consensus disorder prediction 26 43 - -
Vvi5g0579 498 MobiDBLite consensus disorder prediction 1 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0579 Vvi-Chr5 5324109 5333598 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0579 190 349 PHD Gene Family AT5G57380 27.778 3.40e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0579 - - vvi:100252843 966.837