Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0561 ATGGAAGAGGGAATGAGAAGTGGTGATCGTTCGGGCGGTTTGGTGAAGAGTAGGAACGCCTCAGGATGTTTAATTATTAAAAAGAAAGGCGATGGGGTGAGTGGGGCTGGTTCTTCGGGTTCGCAGGGGTTATTAGAATCCAAGAAGGAGAAGAAGAGACCGCGATTGGTTCTTAGCGATTCGGGTTCGAGTGATGAACTGTTAGAATCTCGTCGGCCAAGGGTTCTATCTGGGAGTAGCCAAGCTGGTAATGGTGTAACTGTTTTTAAACAGGGCGTTGAAGAGAGAAATTTTGGTTGCAATGGTGTAGTCGAGAGAAAGAGAAGTAGGTTAGATGTCTTTGAGTTTGACGAGTATGACAGAATTGAGGGGAAAAAGCAGAGGAAGAAGGAACAGATGGATAATGGGGAAGTTGGAGGAAGAGGCTTTTTGGGTTCAAAGCAGGTGCTGCAAAGTAGCAGTCGAAGGGAATTTGAGACAGGTTCAAGCAGACAAGATATTGTGTATAGGAGAAAACATTCTTATTTTGGAAATACAAGTGGCTCATTAGGAGAAAGGAACAGGGGAACTGATTATTCTGAGACTAGCAGGTTTGAGATGAAAAGGGATGGAACTCGGGTACCAGTTTCGTTGTTGAGGGGTCACTCTGATGAACCCATCCGACTGCAGGGAAAAAATGGTGTTTTGAAGGTGATGCCAAAGAAGAAGAATGTGGGAGGGTCTCTCAGAAGTTATGATCCCCAGGAAGCTGAAGGCATTAGACAGGTGTCTAGGCCTGTGGATAGCATGAAGAGGAACATATTGATTCGCCCTTCATCTTATTCAGAAACAAAACTTCATGAGAAACCAGGTTCATTTGTTGGAGCAGAGAAAAAACACCCGAACTTGAGAAAATCATTACCCACTAAGAAGAGTAAAGCCAGCTACTCAGGATCAGAGGACAGTGACACATCATTGAAGGTGGGTTCAAAGAGTGTGGAAGCCCATAGCTCTGGGAAAAGGGGAAAGAGTGAAGGAGAGAGGACTCCACCGTCCGAAAAGCTCCCACCAACTAAAGGAAAGGAAGGAAAAGTTAAGCGTGGTAGTGGCACCGAGAAGCAATTATTACGTGAACGAATAAGGGGAATGCTTGTTAATGCAGGTTGGACAATCGATTATAGACCTAGAAGGAATAGAGACTACCTAGACGCTGTTTACATTAACCCCACAGGAACAGCGTACTGGTCCATCATCAAGGCTTATGATGCTCTCCAAAAGCAAATTGATGATGAGGAGAGTAAATCAAAACCTAGTGGTGACCTCTCTCCCTTTTCTCCCATAGCAGATGAGGTACTCAGCAAACTGACAAGGCAAACTCGTAAGAAGATTGAGAAAGAAATGAAAAGGAAACAAAAGGATCATGCTGGTACTAAGAATACAGATGCATATACCAAGGATGACTCAGAGGATGCAGATGACATTAAGCATGAAGAGAAACTAAGCTCATTCATAAAGCAGAATGGCAAGTCGATTAAACGAACATTAAGGCACGATCGGGGTGAAAAACTATCTTTTGCTTCCAATTCTTTGGTACATGGAAGGAAAAGTAGAAAAATTGGCAGATGTACTTTGTTGGTTCGCAATTCTGGCAAGGGACTGAATTTGGAAACTGATGGCTTTGTTCCATATACTGGGAAACGAACTCTTCTGTCTTGGCTTATTGACTCTGGAACTGTGCAGTTAAGTGAGAAAGTGCAGTATATGAATCGCAGACGCACAAAAGTAATGCTGGAGGGATGGATCACAAGAGATGGAATTCATTGTAGATGCTGTAGTAAAATCCTCACAGTTTCAAAGTTTGAAATTCATGCAGGGAGCAAACTTCGTCAGCCATTCCAGAACATAGTTTTGGACTCTGGGGTTTCCCTTTTGCAGTGCCAGGTAGATGCATGGAATAGACAAGAGGAGTCTGAACGTAGTGGTTTCCACCCTATAGATGTTGATGGTGATGATCCTAATGATGACACTTGTGGTATCTGTGGAGATGGTGGGGATTTGATCTGTTGTGATGGGTGTCCCTCAACATTCCATCAGAGCTGCTTAAATATTCAGATGCTTCCATCTGGTGACTGGCACTGCCCTAATTGCACATGCAAATTTTGCGGAATGGCTGATGGGAGTAATGCTGAAGATGATACAACCGTCAGTGAGCTAGTTACTTGCAGTCTATGTGAGAAAAAATATCACACATCGTGCATTCAAGGGGTGGATGCTGTCCTTTCCGATACCAATAATCCATCCACTTCTTTCTGTGGACAGGGGTGCCGGGAGCTCTTTGAACATTTACAGAAGTTTATTGGGGTCAAACAAGAACTGGAGGCAGGGTTTTCATGGTCTCTCATTCATCGCACAGACCCAGGCTCAGATACATCTGTCCGAGGATTTCCACAAAGGGTGGAAAGCAATTCTAAGCTTGCTATTGCACTGACTGTTATGGATGAGTGCTTTTTGTCCATTGTTGACAGGAGGAGCGAGATTAATTTAATCCATAATGTTCTCTATAATCGTGGATCAAACTTTAATCGGCTGAACTACAGTGGTTTCTACACTGCAATTTTGGAGAGAGGTGATGAAATAATCTGTGCTGCATCAATCAGGATCCATGGAACCCAGTTAGCAGAGATGCCGTTCATTGGAACTCGCCATATATATAGGCGCCAAGGGATGTGCCGTCGGCTTTTTTGTGCTATTGAATCGGCTCTTTGCTCTCTCAAAGTTGAGATGCTAATTATTCCAGCTATATCCGAACTCATGCATACATGGACTGTAGGTTTTGGTTTCAATCCTCTTGAAGAATCCCATAAGCAAGAATTGAGGTCCTTGAATATGTTGGTGTTCCCGGGTACAGACATGTTACAGAAGCTGCTTCTGGAGCAAGAAACTGCTGATGGAAACATGACTGCTAGTCCAGGTACAAAGTCAGTTGAATCCAAAGGCAACAATTGTAATACACCTGATTTGGAAAATAAATCTGATATAGATTCATCCAATGGGCATGATTTATCCATCCATAATCATTCCATTTCGCAACATTCAAATGACAGAAATGACAATGTCTGTGCTTCTGACTCTATTTCCCTGACCCCAGCTGTTCCATTGACTAATCCTTCTATCATGAGTGGTGCTTCAGATGCTCTTCATGAACCTGAAATCCAAGGCTCTGGTGAGGAGACGAGATGTTCTAATTCTGAGTCCGGGGACAAGTTGAATGAAGCTACTGAAGCCAAGTGTCCTTCTCCCTCTTATGCAAGTTGCAATGTTCTTGAGATAGAAAAACATGTATTTGATTCTCCTGGCGAGGGTGATATGCATTCTCCTTCTGAGGACAAAGTCGGTGATGCTCGTGACCCAAATGTCCAAGTCCCTGGTGAGGGGACTATATGTTCTAGTTCTCAGTCAAGGAACAAACTAGGCAAACCTGGTAGTGACTTCAACTGTCTATCTGCTTCTGAAGCAAGTCATAATGGAAAAGCCATGGTGGATTCTCCTGTTGAAAGTAACAGTCGGCCCTCTGATGAGTGTGAAGATGGTAATGGTCTAGAAGTAAATGCTGAAGCCCCTGGTGAGGGGACCATTTGTTCTAACTCTCAGCCAAGTTACAAATTACCTGTATCTACTACAGAGGGTGAAGCAGGTGATGCTCATGAAGTAAATACCCAGGTCTCTGGTAATGGGATTACAGGTTCTAATTCTTGCTTCAAGGACAAAGTAGCTGAACCTCCTAGTGATGTGAAGCCCCTCTCTCCCTCTGATGAGAGTTTCAATATCGAGTTCAAAAAACCTGTATTGGCTTCTCCTGTAGAGGTCAATATTCAGTCTTCCACCAAGGGTGAAGTAGATGATGCTCATGAAGTAGGTGATTCAGTTGCTTCTGTTGAACCTGTTTCAAGTGAAATTTCTGCTCAGAAAATAACTGAGGAAGTTGATAAAAATCAAAAACCTCTTCCTGTTTCTACTTTTGATGGTACTGATGAGAGTACTATACAGTCCAACTCCAATTTTAATAATCAGAGTGCATTTGAGATGGAAGGTAAATCACATGTGGCTTTGGAAGTTGCCTCTAATGCAAATGATTATGAAGAAAACCGGCTAAAGGTATCTGCTGAAAATTCAGGAACTGATGAGTGTGAAGGGAAAGCTGGATCTATTAGTGTTTAA 4197 0.4305 MEEGMRSGDRSGGLVKSRNASGCLIIKKKGDGVSGAGSSGSQGLLESKKEKKRPRLVLSDSGSSDELLESRRPRVLSGSSQAGNGVTVFKQGVEERNFGCNGVVERKRSRLDVFEFDEYDRIEGKKQRKKEQMDNGEVGGRGFLGSKQVLQSSSRREFETGSSRQDIVYRRKHSYFGNTSGSLGERNRGTDYSETSRFEMKRDGTRVPVSLLRGHSDEPIRLQGKNGVLKVMPKKKNVGGSLRSYDPQEAEGIRQVSRPVDSMKRNILIRPSSYSETKLHEKPGSFVGAEKKHPNLRKSLPTKKSKASYSGSEDSDTSLKVGSKSVEAHSSGKRGKSEGERTPPSEKLPPTKGKEGKVKRGSGTEKQLLRERIRGMLVNAGWTIDYRPRRNRDYLDAVYINPTGTAYWSIIKAYDALQKQIDDEESKSKPSGDLSPFSPIADEVLSKLTRQTRKKIEKEMKRKQKDHAGTKNTDAYTKDDSEDADDIKHEEKLSSFIKQNGKSIKRTLRHDRGEKLSFASNSLVHGRKSRKIGRCTLLVRNSGKGLNLETDGFVPYTGKRTLLSWLIDSGTVQLSEKVQYMNRRRTKVMLEGWITRDGIHCRCCSKILTVSKFEIHAGSKLRQPFQNIVLDSGVSLLQCQVDAWNRQEESERSGFHPIDVDGDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLNIQMLPSGDWHCPNCTCKFCGMADGSNAEDDTTVSELVTCSLCEKKYHTSCIQGVDAVLSDTNNPSTSFCGQGCRELFEHLQKFIGVKQELEAGFSWSLIHRTDPGSDTSVRGFPQRVESNSKLAIALTVMDECFLSIVDRRSEINLIHNVLYNRGSNFNRLNYSGFYTAILERGDEIICAASIRIHGTQLAEMPFIGTRHIYRRQGMCRRLFCAIESALCSLKVEMLIIPAISELMHTWTVGFGFNPLEESHKQELRSLNMLVFPGTDMLQKLLLEQETADGNMTASPGTKSVESKGNNCNTPDLENKSDIDSSNGHDLSIHNHSISQHSNDRNDNVCASDSISLTPAVPLTNPSIMSGASDALHEPEIQGSGEETRCSNSESGDKLNEATEAKCPSPSYASCNVLEIEKHVFDSPGEGDMHSPSEDKVGDARDPNVQVPGEGTICSSSQSRNKLGKPGSDFNCLSASEASHNGKAMVDSPVESNSRPSDECEDGNGLEVNAEAPGEGTICSNSQPSYKLPVSTTEGEAGDAHEVNTQVSGNGITGSNSCFKDKVAEPPSDVKPLSPSDESFNIEFKKPVLASPVEVNIQSSTKGEVDDAHEVGDSVASVEPVSSEISAQKITEEVDKNQKPLPVSTFDGTDESTIQSNSNFNNQSAFEMEGKSHVALEVASNANDYEENRLKVSAENSGTDECEGKAGSISV* 1399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0561 1398 MobiDBLite consensus disorder prediction 1329 1353 - -
Vvi5g0561 1398 SMART PHD_3 669 710 IPR001965 -
Vvi5g0561 1398 SMART PHD_3 711 769 IPR001965 -
Vvi5g0561 1398 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 856 947 IPR016181 -
Vvi5g0561 1398 CDD PHD2_CHD_II 670 709 - -
Vvi5g0561 1398 ProSiteProfiles Zinc finger PHD-type profile. 667 712 IPR019787 -
Vvi5g0561 1398 MobiDBLite consensus disorder prediction 1062 1092 - -
Vvi5g0561 1398 Pfam PHD-finger 670 712 IPR019787 -
Vvi5g0561 1398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 659 729 IPR013083 -
Vvi5g0561 1398 MobiDBLite consensus disorder prediction 1136 1152 - -
Vvi5g0561 1398 MobiDBLite consensus disorder prediction 301 325 - -
Vvi5g0561 1398 Coils Coil 453 473 - -
Vvi5g0561 1398 MobiDBLite consensus disorder prediction 1109 1128 - -
Vvi5g0561 1398 MobiDBLite consensus disorder prediction 28 84 - -
Vvi5g0561 1398 Pfam Tify domain binding domain 592 642 IPR032308 -
Vvi5g0561 1398 MobiDBLite consensus disorder prediction 1109 1265 - -
Vvi5g0561 1398 MobiDBLite consensus disorder prediction 126 164 - -
Vvi5g0561 1398 FunFam Increased DNA methylation 1 660 712 - -
Vvi5g0561 1398 ProSitePatterns Zinc finger PHD-type signature. 670 709 IPR019786 -
Vvi5g0561 1398 MobiDBLite consensus disorder prediction 1286 1353 - -
Vvi5g0561 1398 MobiDBLite consensus disorder prediction 269 366 - -
Vvi5g0561 1398 MobiDBLite consensus disorder prediction 1202 1217 - -
Vvi5g0561 1398 MobiDBLite consensus disorder prediction 422 442 - -
Vvi5g0561 1398 MobiDBLite consensus disorder prediction 1379 1398 - -
Vvi5g0561 1398 MobiDBLite consensus disorder prediction 1230 1244 - -
Vvi5g0561 1398 MobiDBLite consensus disorder prediction 977 1033 - -
Vvi5g0561 1398 SUPERFAMILY FYVE/PHD zinc finger 660 715 IPR011011 -
Vvi5g0561 1398 MobiDBLite consensus disorder prediction 977 1004 - -
Vvi5g0561 1398 MobiDBLite consensus disorder prediction 455 484 - -
Vvi5g0561 1398 PANTHER PHD FINGER PROTEIN 12 340 1077 IPR042163 GO:0003714|GO:0045892
Vvi5g0561 1398 MobiDBLite consensus disorder prediction 1013 1033 - -
Vvi5g0561 1398 MobiDBLite consensus disorder prediction 327 366 - -
Vvi5g0561 1398 MobiDBLite consensus disorder prediction 45 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0561 Vvi-Chr5 5189249 5199845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0561 4 970 PHD Transcription Factor Family AT4G14920 49.750 0.0 901
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vvi5g0561 TDBD 4.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0561 - - vvi:100247619 2712.18