LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi5g0557	ATGAATTGCGTTACAGAGCTTGAACCAGATTATTCTGAGTTTGTTGAAGTTGATCCTACCGGTAGATATGGAAGGTACAATGAAATTCTTGGCAAAGGAGCTTCCAAGACAGTATACAGAGCCTTCGATGAGTATGAAGGGATTGAAGTAGCCTGGAACCAGGTGAAGCTTAATGATTTCCTGCAGAGTCCTGAAGAGCTGGAGAGGCTGTACTGTGAAATTCATCTGCTCAAGACCTTGAAACACAACAACATCATGAAATTCTACACTTCCTGGGTTGATCCTGCAAACAGGAACATTAATTTTGTGACAGAGATGTTCACCTCCGGTACTCTTAGACAGTATAGGCTAAAACACAGGAGAGTTAACATCAGAGCTGTGAAGCATTGGTGCAGACAGATCTTAAGGGGGCTGCTCTACCTCCACAACCATAAACCCCCTGTTATCCACAGAGATCTCAAGTGTGACAACATTTTTGTCAATGGCAACCAAGGGGAAGTCAAGATTGGTGATCTGGGGCTGGCTGCAATTCTTCGGAAATCCCATGCAGCTCACTGTGTTGGAACACCAGAGTTCATGGCCCCAGAAGTGTATGAAGAGGAGTACAATGAATTAGTTGACATCTATTCTTTTGGAATGTGCATCTTGGAAATGGTTACCTTTGAATATCCATACAGTGAATGCACCCACCCCGCTCAGATCTACAAGAAAGTTATCTCCGGTAAAAAACCAGATGCCCTTTACAAAGTGAAGGATCCTGAGGTGCGGCAATTTGTCGAAAAATGCTTAGCCACGGTGACTCTTAGGCTTTCTGCCAGGGAGCTTCTGAAGGACCCTTTTCTCCAAAGTGATGACTATGGGTCTGATTTGAGGCCAATAGAGTACCAGAGGGATTTGGGTGAAGTTGGCCCTCTCCCGAGACTACCTCACTATGGCATTCATCATAGTTACAGCTCTTTGAGGAACGAGTATTCGGGCTATCCCGACTTTGAACCAGAGAATGGCTTAGACTGCCACCCAGTTGAGTTTGAAAGAAATGAAATTGATCTCTTCACTTATCAAGAGGATGAGCATTTGGAAAATGTTGATATCTCCATCGAAGGGAGAAAGAGAGATGATCATGGAATCTTTCTAAGGCTCAGAATTTCAGATAAAGAAGGTCGGGTTCGGAACATTTACTTCCCTTTTGATATGGAGACTGACACGGCACTGAGTGTTGCAATGGAAATGGTTTCTGAGCTGGATATTACCGACCAAGATGTGACTAAGATAGCAGATATGATAGATGATGAGATTGCTAGCCTGGTACCGGGTTGGAAGATGGGGCTTGGCATAGAGGAGAGCCAGAATTATGGCCATGATGCAAGTTTCTGTCACCATTGTGCTTCAAACGGTTCCCCTTTAGATTACGTGTCACCAAATAACCCGGGCACCAAAAATTTGCAAGTTCTTCAATGTTCAAGACAGGGATGTGCTGCTGTGCATGGCCGCTTTGAAGAGATCACTTACCGAGTTGAAGGGTCTGAACAATGTGTTACAGAAGGTGCCCCAGTTGTTTCTAGCCAATCTGATGGAATGCAGTATGCTGATATTTGGGCTCAACGAGAGGGACCTGAATTAAGTTCAGAGGGGTCCAGGGAGATCCAATCTGATGAAGAGCATGAATCATTAGACAAATCAATCTATGGAAAGGATGAGAGAGTCATAAATATCGATAACCAAAGTGAATCCAATGCAAAGAACTCTTTTGCTCCCCTGGACGATTATGAGAATGAGATCAGGCAGGAATTGAGATGGCTGAAAGCAAAGTACCAAATGCAGCTGAGGGAGCTTAGAGATCAACAGTTAGGAGCCAAACCAAAATGGCTGAGTCTAACCCCAAATTCAGATAGCATGGAACACAGTAGAGATAACAAGGTTTCACCTTCTTCACTCTCAACCCCACTGGAGGGAGAGGACAATGATCCTCCCTTGAAATCTTTTCCCTGTGGGAAGCATTTTAACTCATTTTTTCCTGTTGATACTGAAAGGGGATGTGCCAATTTAGCATATCGAAGGCCCCATAATCGTGAGCCAGTGAGCGAATCCTGCAGCCCTGAGGACATGGTAACTGCCAAGAGTTTCTTTACAGGGACTTTGCTACCACAATCTCTTCACAGGGCAACTTCTCTTCCAGTTGATGCTGTAGACTTTTGA	2196	0.444	MNCVTELEPDYSEFVEVDPTGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLNDFLQSPEELERLYCEIHLLKTLKHNNIMKFYTSWVDPANRNINFVTEMFTSGTLRQYRLKHRRVNIRAVKHWCRQILRGLLYLHNHKPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSHAAHCVGTPEFMAPEVYEEEYNELVDIYSFGMCILEMVTFEYPYSECTHPAQIYKKVISGKKPDALYKVKDPEVRQFVEKCLATVTLRLSARELLKDPFLQSDDYGSDLRPIEYQRDLGEVGPLPRLPHYGIHHSYSSLRNEYSGYPDFEPENGLDCHPVEFERNEIDLFTYQEDEHLENVDISIEGRKRDDHGIFLRLRISDKEGRVRNIYFPFDMETDTALSVAMEMVSELDITDQDVTKIADMIDDEIASLVPGWKMGLGIEESQNYGHDASFCHHCASNGSPLDYVSPNNPGTKNLQVLQCSRQGCAAVHGRFEEITYRVEGSEQCVTEGAPVVSSQSDGMQYADIWAQREGPELSSEGSREIQSDEEHESLDKSIYGKDERVINIDNQSESNAKNSFAPLDDYENEIRQELRWLKAKYQMQLRELRDQQLGAKPKWLSLTPNSDSMEHSRDNKVSPSSLSTPLEGEDNDPPLKSFPCGKHFNSFFPVDTERGCANLAYRRPHNREPVSESCSPEDMVTAKSFFTGTLLPQSLHRATSLPVDAVDF*	732

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi5g0557	731	MobiDBLite	consensus disorder prediction	536	565	-	-
	Vvi5g0557	731	MobiDBLite	consensus disorder prediction	621	656	-	-
	Vvi5g0557	731	FunFam	probable serine/threonine-protein kinase WNK9	107	286	-	-
	Vvi5g0557	731	FunFam	Probable serine/threonine-protein kinase WNK1	9	105	-	-
	Vvi5g0557	731	Gene3D	Transferase(Phosphotransferase) domain 1	107	287	-	-
	Vvi5g0557	731	Pfam	Protein kinase domain	27	281	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi5g0557	731	SUPERFAMILY	Protein kinase-like (PK-like)	27	282	IPR011009	-
	Vvi5g0557	731	SMART	serkin_6	24	281	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi5g0557	731	Pfam	Oxidative-stress-responsive kinase 1 C-terminal domain	377	432	IPR024678	GO:0004674\|GO:0005524
	Vvi5g0557	731	Coils	Coil	594	614	-	-
	Vvi5g0557	731	CDD	STKc_WNK	22	281	-	-
	Vvi5g0557	731	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	148	160	IPR008271	GO:0004672\|GO:0006468
	Vvi5g0557	731	ProSiteProfiles	Protein kinase domain profile.	24	281	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi5g0557	731	Gene3D	-	360	438	-	-
	Vvi5g0557	731	MobiDBLite	consensus disorder prediction	540	565	-	-
	Vvi5g0557	731	Gene3D	Phosphorylase Kinase; domain 1	9	105	-	-
	Vvi5g0557	731	PANTHER	SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED	12	641	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi5g0557	Vvi-Chr5	5145529	5148400	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi5g0557	1	629	MAP Kinase Kinase Kinase	AT3G22420	53.443	0.0	640

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	WNK_NRBP	Vvi5g0557		Pkinase	2.6e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi5g0557	K08867		-	vvi:100240750	1511.12