Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0552 ATGGCTGAACAAGCATACACTGTGGCATCTGATAGTGAAACAACTGGAGAGGAAAAGATTTCCTCAGCTTTCCCAGAAATTGCAATTGGAATTGACATTGGCACTTCACAATGCAGTGTTGCAGTCTGGAATGGCACCCAGGTGGAGCTCCTTAAGAACACTAGAAACCAGAAGATGATGAGATCATTTGTCACCTTCAAAGATGAAATTCCTTCAGGTGGTGTAAGCAACCAAGTCTCGAATGAGCTTGACATCTTATCTGGAGCTGCAATTTTCAACATGAAACGCCTAATTGGTAGAGTTGACACTGATCCAGTTGTTCATGCAAGCAAAAGCCTCCCATTTTTGGTACATACAATGAACATTGGGATTCGGCCATTTATTGCAGCCTTGGTGAACAATGTATGGAGAGCTACCACTCCGGAAGAAGTTCTTGCAATATTTTTAGTGGAATTGAGAACCATGGCTGAAGAACAACTTAAACGTCCCATAAGAAATGTTGTTTTAACTGTTCCAGTTTCATTCAATCGGTTCCAACTGACACGAATTGAGCGAGCCTGTGCCATGGCTGGCCTCCATGTCCTCAGATTGATGCCTGAACCAACTGCTGTAGCACTGCTTTATGCACAGCAGCAACAACAGACTATACATGAGAATATGGGCAGCGGAAATGAGAAGGTTGCTCTCATTTTTAATATGGGTGCAGGATATTGTGACGTAGCTATAACAGCTACAGCAGGGGGAATTTCACAGATAAAAGCCTTATCAGGGACCACCATGGGAGGTGAAGACATGCTTCAGAATTTGATGAATCATCTCGTGCCAAATTCAGAGTCTTTCTTCTTCAACCATGGAATTAACGATATCAAATCGATAGGGTTGCTTAGAGTAGCAGCTCAGGATGCAATTCACAAGCTCTCTTACCAAACTTCTGTTCTAGTTGAGGTTGACTTGGGAAATGGGTTAAAAATAAGTAAGGTTGTGAGTCAGGTGGAATTTGAGGAATTGAATCATGATGTGTTTGAGAAATGTCGAAGCCTCATAATCCAGTGCCTGCATGATGCAAAGGTGGAAGTAGAGGATGTGAGTGATGTAATACTCGTTGGTGGGTGTTCCCATATTCCAATGATTAGGAATGTCGTCAAGGATATCTGTAAGGGAAGAGAAATATATGCAGGGATGAATTCATTGGAAGCTGCTGTTACTGGAGCAGCATTGGAAGGAGCAGTTGCTTCAGGTATTAGCGATCCTTTTGGCAATCTGGACTTGCTAACTATTCAAGCTACCCCTCTTAGCATTGGGATTCGAGCTGATGGAAACAACGTTGTTCACATCATAAATCGGAACACCACAATTCCAGCACGCAAGGAGCTGGTTTTCTCTACTGCTCATGACAACCAAACTGAGGCACTGATTGCTGTTTATGAAGGTGAGGGGAAAAAGGTAGAAGAGAACCACCTGTTGGGTTTTTTCAAGATTACCAGGATTCCTCCTCTCCCCAAAGGTGTTCCAGAGCTTAATGTCTGCATGGACATTGATGCTTCAAATGTATTGAGGGTTTTGGCGGGGGTGGTGCTGCCAGGGAACAAACAACTAGTGACTCCCTTCATGGAAGTCAGGATGCCAACCGTTGACGATGGCCATGGCTGGTGTGCTGAAGCTATTCATAGAACTCATGGATCGACTCTAGACCTGGTTACATTGTGGAAGAAGGCAATGGAGTAA 1725 0.4377 MAEQAYTVASDSETTGEEKISSAFPEIAIGIDIGTSQCSVAVWNGTQVELLKNTRNQKMMRSFVTFKDEIPSGGVSNQVSNELDILSGAAIFNMKRLIGRVDTDPVVHASKSLPFLVHTMNIGIRPFIAALVNNVWRATTPEEVLAIFLVELRTMAEEQLKRPIRNVVLTVPVSFNRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAQQQQQTIHENMGSGNEKVALIFNMGAGYCDVAITATAGGISQIKALSGTTMGGEDMLQNLMNHLVPNSESFFFNHGINDIKSIGLLRVAAQDAIHKLSYQTSVLVEVDLGNGLKISKVVSQVEFEELNHDVFEKCRSLIIQCLHDAKVEVEDVSDVILVGGCSHIPMIRNVVKDICKGREIYAGMNSLEAAVTGAALEGAVASGISDPFGNLDLLTIQATPLSIGIRADGNNVVHIINRNTTIPARKELVFSTAHDNQTEALIAVYEGEGKKVEENHLLGFFKITRIPPLPKGVPELNVCMDIDASNVLRVLAGVVLPGNKQLVTPFMEVRMPTVDDGHGWCAEAIHRTHGSTLDLVTLWKKAME* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0552 574 SUPERFAMILY Actin-like ATPase domain 224 410 IPR043129 -
Vvi5g0552 574 SUPERFAMILY Actin-like ATPase domain 27 210 IPR043129 -
Vvi5g0552 574 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 424 532 IPR029047 -
Vvi5g0552 574 Gene3D Actin; Chain A, domain 4 262 343 - -
Vvi5g0552 574 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 419 541 IPR029047 -
Vvi5g0552 574 FunFam Heat shock 70 kDa protein 8 262 343 - -
Vvi5g0552 574 PANTHER HEAT SHOCK PROTEIN 70KDA 28 522 IPR013126 GO:0005524|GO:0140662
Vvi5g0552 574 Gene3D - 29 409 - -
Vvi5g0552 574 CDD HSP70_NBD 29 409 - -
Vvi5g0552 574 Pfam Hsp70 protein 28 530 IPR013126 GO:0005524|GO:0140662
Vvi5g0552 574 Gene3D - 92 147 - -
Vvi5g0552 574 FunFam Heat shock 70 kDa protein 8 417 532 - -
Vvi5g0552 574 PRINTS 70kDa heat shock protein signature 422 441 - -
Vvi5g0552 574 PRINTS 70kDa heat shock protein signature 362 378 - -
Vvi5g0552 574 PRINTS 70kDa heat shock protein signature 394 414 - -
Vvi5g0552 574 PRINTS 70kDa heat shock protein signature 167 187 - -
Vvi5g0552 574 PRINTS 70kDa heat shock protein signature 27 40 - -
Vvi5g0552 574 PRINTS 70kDa heat shock protein signature 503 519 - -
Vvi5g0552 574 Gene3D - 213 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0552 Vvi-Chr5 5094304 5096028 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0552 28 534 Calmodulin-binding Proteins AT3G12580 37.137 7.53e-104 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0552 K09489 - vvi:100252916 1124