Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0549 ATGCCTTTGTTGAATGCTAGAAGAAGCAACTCTTCTAATAACATAGTTGCATTTCTTAAAGTTCCCAAGGTGAACAACAGTTTGGGGATTTATGACCACAATGAAAGCCGCGCCCCATCCCGGGCTGTCCTGCTTGCAGGTCTTTTATCCTGCTCCATACTTGCTGTACTGTTTGCGGCGTCCGCCATCTATCATCATCCTCTTGCTCAGCCCTACATACGAAAACACCCTCCTCCAACTTTAAAAGTGCCGGTGGAGATAAATTTGAAAGCCTTTTCATTCCAGGAGTTGCGGGAAGGGACAAATGGGTTCAAAAACAAGCTAGGTGGCGGAGCTTTTGGTACTGTTTATGGGGGGGTTCTTACCATAGAGGATGAAGAGGTTGAAATTGCTGTGAAGCAGCTAGATAAGGTGATTGATCAACAAGGTGAGAAGGAGTTCATGAATGAAGTTCGAGTAATTGGTCTGACCCATCACAAGAATCTGGTTCGGCTGTTGGGTTTCTGCAATCAGCACAATCATCGACTTCTGGTTTATGAGCTGATGAAGAATGGGGCTCTATCTAGTTTCCTATTTGATGAAGGGAAGAAACCCAGTTGGGATCAAAGAGCTCAAATCGTGCTTGGAATCTCAAGGGGTCTGTTATATTTGCATGAAGAATGCGAGACACAGATCATTCATTGCGACATAAAGCCACAGAATGTTCTTCTTGACAGTAACTATACTGCCAAGATAGCAGATTTTGGTCTGGCAAAGCTTCTAAAGAAAGACCAAACACGGACCAGCACCAATGTGAGAGGCACAATGGGATACATGGCACCGGAATGGCTCAAGAATGCACCAGTAACCACAAAAGTTGACGTCTATAGCTATGGGGTTATGTTGCTTGAGATTATATTTTGCAGAAAGCACTTAGAGTTGCACCGAATTGAGGATGAAGAGACTGGAGGGGATGACATGATTTTAGTTGATTGGGTTCTATGTTGCGTTAGAGATGGGAAATTAGAAGCTGTTGTTAGTCATGATACTGAGCTTTTATGTGATTATAAGAGGTTCGAGAGGATGGCCATGGTTGGTTTATGGTGCGTATGTCCTAACCCAACCCTTCGGCCCTCTATGAAGATGGTGATGCAAATGTTAGAAGGAAGTATTGATGTTGGTATTCCTCCCCTGATCGAAACACTCATGTTTTAA 1194 0.4372 MPLLNARRSNSSNNIVAFLKVPKVNNSLGIYDHNESRAPSRAVLLAGLLSCSILAVLFAASAIYHHPLAQPYIRKHPPPTLKVPVEINLKAFSFQELREGTNGFKNKLGGGAFGTVYGGVLTIEDEEVEIAVKQLDKVIDQQGEKEFMNEVRVIGLTHHKNLVRLLGFCNQHNHRLLVYELMKNGALSSFLFDEGKKPSWDQRAQIVLGISRGLLYLHEECETQIIHCDIKPQNVLLDSNYTAKIADFGLAKLLKKDQTRTSTNVRGTMGYMAPEWLKNAPVTTKVDVYSYGVMLLEIIFCRKHLELHRIEDEETGGDDMILVDWVLCCVRDGKLEAVVSHDTELLCDYKRFERMAMVGLWCVCPNPTLRPSMKMVMQMLEGSIDVGIPPLIETLMF* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0549 397 Pfam Protein kinase domain 105 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0549 397 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 7 390 - -
Vvi5g0549 397 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 182 387 - -
Vvi5g0549 397 FunFam S-receptor-like serine/threonine-protein kinase 74 181 - -
Vvi5g0549 397 SUPERFAMILY Protein kinase-like (PK-like) 80 381 IPR011009 -
Vvi5g0549 397 ProSitePatterns Protein kinases ATP-binding region signature. 108 133 IPR017441 GO:0005524
Vvi5g0549 397 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Vvi5g0549 397 SMART serkin_6 102 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0549 397 Gene3D Phosphorylase Kinase; domain 1 80 181 - -
Vvi5g0549 397 ProSiteProfiles Protein kinase domain profile. 102 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0549 397 Gene3D Transferase(Phosphotransferase) domain 1 182 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0549 Vvi-Chr5 5065729 5066922 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0549 45 391 Receptor kinase-like Gene Family AT5G03140 37.784 2.74e-72 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi5g0549 Pkinase 2.4e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0549 - - vvi:100266656 796.193