Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0548 ATGGATGATTGTTACACCATGGCTGCTTCCCTGGTGGATTCTAGATGTATCAAGAAGAAGACGCCTTTGTTGAATGCCAGAAAGAGTGTTTCTACCAAAGGAATCAAGGCACTTATCAAGGTGCCCATGAAGATTAATGATCCCGGTATGCTTCCAAAGAAGAAGAATTCCAACGATCGGGTTTATCTGACGGTGGGTTTTATAACCAGCGGAGTACTAGCAGTTCTCTCTGCAGCTTTTGCTGTCTACTACCATCCTGTAGCTCGAAGATTAGTCAAAAGAAAGCACTTCCAGAACGCAAATGCCATAGGCATTAACTTCCGGCAGTTCACATTTCAGGAGCTGCATGAAGCAACCAATGGCTTCAGCAAGACAATCGGACGGGGGTCTTCAGGGAAGGTGTACAGTGGGGTTCTAAGCTCAAAGGACATACATATTGAAATTGCGGTAAAGAAGCTAGAGAAAGCGATTGAGAAAGGAGAGAAGGAATTCGTGACGGAGCTCAAAATAATTGGCCGGACCCATCATAAAAATCTGGTAAGGCTGTTGGGCTTTTGCATTGAAGACGGTCATCAGCTTCTGGTGTATGAGTTAATGAAAAATGGGACACTATCTGACTTTCTGTTCGGAAAGGAAGAGAAGCCAATCTGGATTCAGCGGGCTGAAATGGCTCTTGGGATCGCAAGAGGCCTGCTATACTTGCATGAAGAATGTGAGACCCAGATCATTCATTGCGACATAAAGCCCCAGAATGTGCTGCTAGATGCCAACTACACTGCAAAAATTGCAGATTTTGGGCTTTCCAAGCTTTTAAACAAAGACCAAACCAAAACCATCACCAATATAAGAGGAACAATGGGATACATGGCACCCGAATGGTTGAGGAATGCAGCCGTAACAGCCAAAGTGGATATCTACAGTTTCGGTGTAATGCTGCTGGAGATTATTTGTGCTAGAAGGCATATAGAATTGAGCCGGGTTGAGGAAGAAACTGAAGACGATGACTTAGTTATCATTGATTGGGTTCTCAGTTGTCTGATTTCAGGGAAACTAGAGAAGCTGGTGGGGCATGACTCAGAGGTATTGGATGATTTCAAGAGGTTTGAGAGAATGGCATTAGTTGGGTTATGGTGCGTCCACCCAGACCCAATTCTTAGGCCGTCGATGAAAAAGGTGACACAAATGCTGGAAGGGACAGTTGAAGTTGGGATCCCACCTCTGCTCATGAAAGGCTAA 1236 0.4482 MDDCYTMAASLVDSRCIKKKTPLLNARKSVSTKGIKALIKVPMKINDPGMLPKKKNSNDRVYLTVGFITSGVLAVLSAAFAVYYHPVARRLVKRKHFQNANAIGINFRQFTFQELHEATNGFSKTIGRGSSGKVYSGVLSSKDIHIEIAVKKLEKAIEKGEKEFVTELKIIGRTHHKNLVRLLGFCIEDGHQLLVYELMKNGTLSDFLFGKEEKPIWIQRAEMALGIARGLLYLHEECETQIIHCDIKPQNVLLDANYTAKIADFGLSKLLNKDQTKTITNIRGTMGYMAPEWLRNAAVTAKVDIYSFGVMLLEIICARRHIELSRVEEETEDDDLVIIDWVLSCLISGKLEKLVGHDSEVLDDFKRFERMALVGLWCVHPDPILRPSMKKVTQMLEGTVEVGIPPLLMKG* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0548 411 FunFam S-receptor-like serine/threonine-protein kinase 89 198 - -
Vvi5g0548 411 ProSiteProfiles Protein kinase domain profile. 120 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0548 411 SMART serkin_6 120 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0548 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 242 254 IPR008271 GO:0004672|GO:0006468
Vvi5g0548 411 ProSitePatterns Protein kinases ATP-binding region signature. 126 152 IPR017441 GO:0005524
Vvi5g0548 411 SUPERFAMILY Protein kinase-like (PK-like) 101 400 IPR011009 -
Vvi5g0548 411 Gene3D Phosphorylase Kinase; domain 1 85 198 - -
Vvi5g0548 411 Pfam Protein kinase domain 123 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0548 411 CDD STKc_IRAK 126 398 - -
Vvi5g0548 411 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 199 403 - -
Vvi5g0548 411 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 406 - -
Vvi5g0548 411 Gene3D Transferase(Phosphotransferase) domain 1 199 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0548 Vvi-Chr5 5060171 5061406 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0548 54 410 Receptor kinase-like Gene Family AT5G10530 38.235 3.51e-72 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi5g0548 Pkinase 1.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0548 - - vvi:109122557 819.69