Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0546 ATGACAGTGGCAGCTACCATTCTTCTTTTGTTGTCTCTTCTACTGGTATACTCCTTGCTTGGCTCCCATGCCCAAACACCTGAAAACATATCCTTGGGATCTGGCCTCACCACCACCACTGATTCAACTTGGCTCTCACCTTCAGGGGATTTTGCATTTGGATTCTATCCCCTTGATAGCGGCCTCTTCCTTCTTGGAATTTGGTTCAATAAAATCCCTGAAGAAACCCTCGTTTGGTCAGCTAATCGAGATAATCCCGCTCCAGAGGGATCCACTATCAACCTAACAGCATCTGGCTATCTCTTGCTGACATACCCCAATGGATCATTAGATCACATCTACGAGGACGCTGCTGCAAGCTCAGCTTCCATGTTAGACAACGGCAACTTTGTCTTATGGAGCTCTGTTTCGAGGGTCCTCTGGCAGAGCTTCGAACATCCAACAGACACCCTCTTACCGGGACAAACGATTCCTGCCGGAGACACCAGGCTTTTCTCCAACACGAATGGAACCGTGGACTACTCAAAGGGAAATTTCCAGCTGGAGGTGCAGTCCGTCGATGGAAATATGGGGCTGTTTGCATTCCGATTCTCAGATAGTGGTTACTGGTGGTCTAATACAACTCAACAGACAAACGTCAGTCTTGTTTTTAACGAGACTACCGCGTCAATGTATATGACCAATTTAACTTCAATCATCTTCCGGATGACTCGAGATGTGCCTACACCAGTTAACATCTACTACCACCGAGCAACCATTGAAGATACTGGGAATTTCCAGCAATACGTTTACAATAAGGTAAATGGCACAGGGTGGAGAAGCATCTGGAGAGCAATTGAAGAACCTTGCACCGTTAATGGTATTTGCGGTGTTTATGGATACTGCACTTCTCCCCGTAATCAAAACGCTACTTGCAGCTGCCTTCCTGGTTATTCTCTTATTGATCCCAATATCCCTTCCAAAGGATGCCGCCCAGATGTTCCTGTGGAACAGTGCGCAAACACCCCATCTGAGACAGAGTATCGTGTAGAAGTGATCGATGATGCTGATATTAAAAACGATATATTTGCAGAGTTGACTCGATTGTATGGTTATGATTTAGATGGATGCATAAAGGCAGTCCAGGATGATTGCTATTGCGTGGCAGCTACGTATACAACCGACAATGTTTGTCGCAAGAAAAGGATTCCTTTCATGAATGCCAGAAAGAGCATCCCTTCTACTACAGGGATAAAGGCCATCATCAAGGTGCCAGTGAAGATAGAGGATCCAATAAAGGGGACAAACAATTCAAGGCCTCAGGTTGTTGTGTTAGTATGCCTTTCAGTAGTCTCCTTTCTAGCTCTACTATTCGCTACAATTATCATCTATCAGAACCTTGTAGTGCCACGATTCGGATTAAGCAAACTAGCTCCAAGTACACAATCAGCAGACATCAACTTGAGGACATTCACATACCAGGAGCTGCATAAAGCGACAGATGGATTCAGAAACAGACTTGGAAGAGGAGCATCAGGGTCAGTTTACAGTGGGACTCTGCGCTTCGAAGATAAGGAGATGGAGATTGCTGTGAAGAAGCTGGAAAGAGTGATTGAACAGGGCGACAGAGAATTTTTGGCTGAGGTAAGGGCAATTGGCCAAACTCATCACAGAAATCTCGTCCGGCTGTTGGGATTCTGTAATGAGCAAAGCCACCGACTTCTGGTCTATGAGTTAATGAAAAATGGACCTCTGTCTAGTTTCCTATTCAGTAAGGGGGAGAAACCCTGCTGGGATCATAGAGCTGAGATAGTGCTTGCAATTGCAAGAGGCCTGCTATATCTGCATGAGGAATGTGAAACTCGGATCATCCACTGTGACATAAAGCCCCAGAATGTGTTACTCGATCAACACTACAATGCTAAGATTGCAGACTTCGGCCTCGCAAAGCTATTGAGGAAAGACCAGACCAGGACAAGCACCAACGCCAGAGGAACAATGGGATACATGGCACCGGAATGGCTCAAATGTGCTCCTGTTACAGCCAAAGTGGATGTCCACAGTTTTGGGGTGATGCTGCTGGAGATTATATGCTGCAGAAGGCACATAGAGTTGGACCGGATTGAGGAAGAGACTGAAGATGATGACCTCATCCTAACAGATTGGGTGCTAAATTGTCTGAGATTGGGAAAGCTAGAGGTGGTGGTGAAGCATGATCCAGAAGTACTGGGTGATTTCAAAAGGTTTGAGAGAATGGCAATGGTGGGGTTATGGTGTGTTAATCCCGACCCAATTCTCCGTCCAACAATGAAGAGGGTGATACAAATGTTAGAAGGAACAATAGAAGCTGGTGTCCCACCCCTGGTCACTGCCCAATCATTATAA 2364 0.4585 MTVAATILLLLSLLLVYSLLGSHAQTPENISLGSGLTTTTDSTWLSPSGDFAFGFYPLDSGLFLLGIWFNKIPEETLVWSANRDNPAPEGSTINLTASGYLLLTYPNGSLDHIYEDAAASSASMLDNGNFVLWSSVSRVLWQSFEHPTDTLLPGQTIPAGDTRLFSNTNGTVDYSKGNFQLEVQSVDGNMGLFAFRFSDSGYWWSNTTQQTNVSLVFNETTASMYMTNLTSIIFRMTRDVPTPVNIYYHRATIEDTGNFQQYVYNKVNGTGWRSIWRAIEEPCTVNGICGVYGYCTSPRNQNATCSCLPGYSLIDPNIPSKGCRPDVPVEQCANTPSETEYRVEVIDDADIKNDIFAELTRLYGYDLDGCIKAVQDDCYCVAATYTTDNVCRKKRIPFMNARKSIPSTTGIKAIIKVPVKIEDPIKGTNNSRPQVVVLVCLSVVSFLALLFATIIIYQNLVVPRFGLSKLAPSTQSADINLRTFTYQELHKATDGFRNRLGRGASGSVYSGTLRFEDKEMEIAVKKLERVIEQGDREFLAEVRAIGQTHHRNLVRLLGFCNEQSHRLLVYELMKNGPLSSFLFSKGEKPCWDHRAEIVLAIARGLLYLHEECETRIIHCDIKPQNVLLDQHYNAKIADFGLAKLLRKDQTRTSTNARGTMGYMAPEWLKCAPVTAKVDVHSFGVMLLEIICCRRHIELDRIEEETEDDDLILTDWVLNCLRLGKLEVVVKHDPEVLGDFKRFERMAMVGLWCVNPDPILRPTMKRVIQMLEGTIEAGVPPLVTAQSL* 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0546 787 SUPERFAMILY Protein kinase-like (PK-like) 478 771 IPR011009 -
Vvi5g0546 787 Pfam S-locus glycoprotein domain 245 312 IPR000858 GO:0048544
Vvi5g0546 787 SMART serkin_6 494 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0546 787 FunFam Serine/threonine-protein kinase 25 146 - -
Vvi5g0546 787 Pfam D-mannose binding lectin 76 157 IPR001480 -
Vvi5g0546 787 Gene3D Transferase(Phosphotransferase) domain 1 573 777 - -
Vvi5g0546 787 ProSiteProfiles Protein kinase domain profile. 494 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0546 787 ProSitePatterns Protein kinases ATP-binding region signature. 500 526 IPR017441 GO:0005524
Vvi5g0546 787 SMART blect_4 35 147 IPR001480 -
Vvi5g0546 787 ProSitePatterns Serine/Threonine protein kinases active-site signature. 616 628 IPR008271 GO:0004672|GO:0006468
Vvi5g0546 787 Gene3D Phosphorylase Kinase; domain 1 476 572 - -
Vvi5g0546 787 SUPERFAMILY alpha-D-mannose-specific plant lectins 63 207 IPR036426 -
Vvi5g0546 787 ProSiteProfiles Bulb-type lectin domain profile. 29 145 IPR001480 -
Vvi5g0546 787 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 573 777 - -
Vvi5g0546 787 Gene3D - 26 146 IPR036426 -
Vvi5g0546 787 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 148 282 - -
Vvi5g0546 787 FunFam S-receptor-like serine/threonine-protein kinase 468 572 - -
Vvi5g0546 787 CDD B_lectin 39 147 IPR001480 -
Vvi5g0546 787 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 38 780 - -
Vvi5g0546 787 PIRSF SRK 1 786 IPR024171 GO:0004674
Vvi5g0546 787 Pfam Protein kinase domain 498 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0546 787 Gene3D - 147 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0546 Vvi-Chr5 5047261 5049624 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0546 420 785 Receptor kinase-like Gene Family AT5G03140 40.741 5.18e-70 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi5g0546 Pkinase 2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0546 - - vvi:100254587 1557.35