Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0543 ATGGCAGCCACCATACTTCTTTTGCTGTCTCTATTACCGGTACACTTCTTGCTTGGCTCCCATGCGGAAAACATAAGCTTAGGGTCCAGCTTCGACACCAACACAAATTCGTCTTGGCTCTCACCCTCAGGCGAGTTTGCTTTCGGGTTCTACCCTCTCGCTGGTGGCCTGTTTCTTGTTGGAATTTGGTTCGATAAAATTCCTGAGAAAACCGTTGTTTGGTCAGCAAATCGGGATGATCCAGCCCCTGCTGGATCCTCCATCAACTTCACGGTCGCTGGAAGCCTTGTGATGACGGTACCCAACGGAACCGTCACCCAAATATACAACGGCGACACCAATGCTGCAAATTCAGCTTCCTTGCAAAACAATGGCAACCTTGTCTTATGGAGCTCTGTTTCGAGGGTCCTCTGGCAGAGCTTCGAACATCCAACAGACACCCTCTTACCGGGACAAACGATTCCTGCCGGAGACACCAGGCTTTTCTCCAACACGAATGGAACCGTGGACTACTCAAAGGGAAATTTCCAGCTGGAGGTGCAGTCCGTCGATGGAAATATGGGGCTGTTTGCATTCCGATTCTCAGATAGTGGTTACTGGTGGTCTAATACAACTCAACAGACAAACGTCAGTCTTGTTTTTAACGAGACTACCGCGTCAATGTATATGACCAATTTAACTTCAATCATCTTCCGGATGACTCGAGATGTGCCTACACCAGTTAACATCTACTACCACCGAGCAACCATTGAAGATACTGGGAATTTCCAGCAATACGTTTACAATAAGGTAAATGGCACAGGGTGGAGAAGCATCTGGAGAGCAATTGAAGAACCTTGCACTGTTAATGGTATTTGCGGTGTTTATGGATACTGCACTTCTCCCCGTAATCAAAACGCTACTTGCAGCTGCCTTCCTGGTTATTCTCTTATTGATCCCAATATCCCTTCCAAAGGATGCCGCCCAGATGTTCCTGTGGAACAGTGCGCAAACACCCCATCTGAGACAGAGTATCGTGTAGAAGTGATCGATGATGCTGATATTAAAAACGATATATTTGCAGAGTTGACTCGATTGTATGGTTATGATTTAGATGGATGCATAAAGGCAGTCCAGGATGATTGCTATTGCGTGGCAGCTACGTATACAACCGACAATGTTTGTCGCAAGAAAAGGATTCCTTTTATGAATGCCAGGAAGAGCAGCCCTTCTACTGATGGGATACAAGCTATCATCAAGGTGCCAGTGAAGACTGATGTTCAAATAGCGGGGAAGAAAGAGCCTCGTTCTCAGATGATTCTGAAGGTATGCCTTTCCATAAGCGCCATTCTTGCTTTCCTATTCGCTGCCGCTGCAATATATAATCACCCTATAGCTAGACGATCCAGAGCAAGAAAAGTCCTTGCAAACCCTGCAGAGATCAACCTGAACAAATTCACATATAGGGAGTTGCATGAGGCAACCGATGGGTTCAAAAACAAAATCGGAAGAGGATCATTCGGGACAGTATATAGTGGGATTCTAAATTTAGAGGATAAGCAGATCAAGATTGCTGTGAAGAAGCTGGAGAGAGTGATGGAACAAGGTGACAAAGAATTTCTGACAGAGGTGAGGGTAATAGGCCAAACCCATCACAAAAATTTAGTCAAGCTGTTGGGTTTCTGTGATGAGCAAAGTCACAGACTTCTAGTCTATGAGCTGATGACAAATGGGACTCTGTCTGGTTTTCTATTTGCCGAGGGTGAGAAACCATGCTGGGATCATAGAGCTCAAATAGTTCTGGCAATTGCACGTGGGCTCTCGTATTTACATGATGAATGTGAAACCCAGATCATCCACTGTGATATAAAGCCCCAGAACGTGTTACTTGATAGTCAATTCAATGCCAAGATTGCAGACTTTGGCCTGGCGAAGCTACTGATGAAAGATCAGACTAGAACAAGCACCAATGTGAGAGGAACAATGGGATACATGGCACCAGAATGGCTCAAAAATGCTCCAGTGACGGCCAAGGTTGATGTCTACAGTTTTGGGGTGCTGCTGCTTGAGATCATATGCTGCAGAAGGCACATAGAGCTGAACCGGGTTGAGGAAGAATCGGAAGAAGATGACCTTATTCTCATGGATTGGGTTCTGACTTGTGTGAGAAAGGGTAAGCTAGAGGCGGTGGTTAAGCATGATCCAGAAGTGTCGGATGATTTCAAAAGGTTCGAGAGAATGGCAATGGTTGGTTTGTGGTGTGTTCATCCGGACCCAGTTCTACGTCCAACCATGAAGAAGGTGATTCAGATGTTGGAAGGCACAGTGGAGGTGGCCGTCCCACCCCTGGTCCATGCCCCAACATTCTGA 2349 0.4615 MAATILLLLSLLPVHFLLGSHAENISLGSSFDTNTNSSWLSPSGEFAFGFYPLAGGLFLVGIWFDKIPEKTVVWSANRDDPAPAGSSINFTVAGSLVMTVPNGTVTQIYNGDTNAANSASLQNNGNLVLWSSVSRVLWQSFEHPTDTLLPGQTIPAGDTRLFSNTNGTVDYSKGNFQLEVQSVDGNMGLFAFRFSDSGYWWSNTTQQTNVSLVFNETTASMYMTNLTSIIFRMTRDVPTPVNIYYHRATIEDTGNFQQYVYNKVNGTGWRSIWRAIEEPCTVNGICGVYGYCTSPRNQNATCSCLPGYSLIDPNIPSKGCRPDVPVEQCANTPSETEYRVEVIDDADIKNDIFAELTRLYGYDLDGCIKAVQDDCYCVAATYTTDNVCRKKRIPFMNARKSSPSTDGIQAIIKVPVKTDVQIAGKKEPRSQMILKVCLSISAILAFLFAAAAIYNHPIARRSRARKVLANPAEINLNKFTYRELHEATDGFKNKIGRGSFGTVYSGILNLEDKQIKIAVKKLERVMEQGDKEFLTEVRVIGQTHHKNLVKLLGFCDEQSHRLLVYELMTNGTLSGFLFAEGEKPCWDHRAQIVLAIARGLSYLHDECETQIIHCDIKPQNVLLDSQFNAKIADFGLAKLLMKDQTRTSTNVRGTMGYMAPEWLKNAPVTAKVDVYSFGVLLLEIICCRRHIELNRVEEESEEDDLILMDWVLTCVRKGKLEAVVKHDPEVSDDFKRFERMAMVGLWCVHPDPVLRPTMKKVIQMLEGTVEVAVPPLVHAPTF* 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0543 782 CDD B_lectin 34 144 IPR001480 -
Vvi5g0543 782 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 568 773 - -
Vvi5g0543 782 SUPERFAMILY alpha-D-mannose-specific plant lectins 58 204 IPR036426 -
Vvi5g0543 782 Gene3D - 145 279 - -
Vvi5g0543 782 SUPERFAMILY Protein kinase-like (PK-like) 470 766 IPR011009 -
Vvi5g0543 782 ProSiteProfiles Bulb-type lectin domain profile. 24 142 IPR001480 -
Vvi5g0543 782 PIRSF SRK 1 781 IPR024171 GO:0004674
Vvi5g0543 782 Pfam S-locus glycoprotein domain 242 309 IPR000858 GO:0048544
Vvi5g0543 782 FunFam Serine/threonine-protein kinase 20 143 - -
Vvi5g0543 782 SMART blect_4 30 144 IPR001480 -
Vvi5g0543 782 ProSitePatterns Protein kinases ATP-binding region signature. 495 521 IPR017441 GO:0005524
Vvi5g0543 782 FunFam S-receptor-like serine/threonine-protein kinase 459 567 - -
Vvi5g0543 782 Pfam Protein kinase domain 492 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0543 782 CDD STKc_IRAK 495 767 - -
Vvi5g0543 782 SMART serkin_6 489 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0543 782 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 145 279 - -
Vvi5g0543 782 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 34 775 - -
Vvi5g0543 782 Gene3D Transferase(Phosphotransferase) domain 1 568 772 - -
Vvi5g0543 782 Gene3D Phosphorylase Kinase; domain 1 454 567 - -
Vvi5g0543 782 ProSiteProfiles Protein kinase domain profile. 489 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0543 782 Gene3D - 20 143 IPR036426 -
Vvi5g0543 782 ProSitePatterns Serine/Threonine protein kinases active-site signature. 611 623 IPR008271 GO:0004672|GO:0006468
Vvi5g0543 782 Pfam D-mannose binding lectin 71 154 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0543 Vvi-Chr5 5000921 5003269 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0543 437 775 Receptor kinase-like Gene Family AT3G53380 40.230 3.89e-74 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi5g0543 Pkinase 1.6e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0543 - - vvi:100263125 1572.76