Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0542 ATGAAAGATCAGACTAGAACAAGCACCAATGTGAGAGGAACAATGGGATACATGGCACCAGAATGGCTCAAAAATGTTCCAGTAACGGCCAAGGTTGATGTCTACAGTTTTGGGGTGCTGCTGCTTGAGATCATATGCTGCAGAAGGCACATAGAGCTGAACCGGGTTGAGGAAGAATCGGAAGAAGATGACCTTATTCTCGTAGATTGGGTTCTGACTTGTGTGATTAGGGGTAAGCTAGAGGCGGTAGTTAAGCATGATCCAGAAGTGTCGGATGATTTCAAAAGGTTCGAAAGAATGGCAATGGTTGGTTTGTGGTGTGTTCATCCGGACCCAATTCTACGTCCAACCATGAAGAAGGTGATTCAGATGTTGGAAGGAACAGTGGAGGTGGCCGTCCCACCCCTGGCCCATGCCCCAACATTCTAA 429 0.4732 MKDQTRTSTNVRGTMGYMAPEWLKNVPVTAKVDVYSFGVLLLEIICCRRHIELNRVEEESEEDDLILVDWVLTCVIRGKLEAVVKHDPEVSDDFKRFERMAMVGLWCVHPDPILRPTMKKVIQMLEGTVEVAVPPLAHAPTF* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0542 142 Gene3D Transferase(Phosphotransferase) domain 1 1 133 - -
Vvi5g0542 142 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 135 - -
Vvi5g0542 142 FunFam Uncharacterized protein 1 132 - -
Vvi5g0542 142 SUPERFAMILY Protein kinase-like (PK-like) 6 137 IPR011009 -
Vvi5g0542 142 Pfam Protein kinase domain 7 123 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0542 142 ProSiteProfiles Protein kinase domain profile. 1 129 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0542 Vvi-Chr5 4977348 4977776 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0542 3 135 Receptor kinase-like Gene Family AT3G53380 39.552 6.93e-25 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi5g0542 Pkinase 5.4e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0542 - - vvi:100245961 286.574