Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0541 ATGGCGGCTACCATACTTCTTGTGTTCTCTCTGCTACTGCTACACTTCTTCCTTGGATCCCATGCCCAAGTGAAGGGAAATATAAGCTTAGGATCCAGCTTCGACACCCACACAAATTCCTCGTGGCTCTCACTCTCAGGCGACTTTGCTTTCGGGTTCTACCCTCTCCCTGGTGGTCTGTTTCTTCTTGGAATTTGGTTCAATAAGATTCCTGAGAAAACCGTTGTTTGGTCGGCAAATCGGGATGCTCCAGCCCCTGCTGGATCCTCCGTCAACCTCACGCTCGCTGGAAGCCTTGTGCTGACGTTCCCCAACGGAACCGTCTCCCAAATATCCAACGGCGCCAGTGCTGCGAATTCAGCTTCCTTGCAAAACAACGGCAACCTTGTCTTAAGAAACTTTGTTTCAAGTGTGGTGTGGCAAAGTTTTGATAACCCAACGGACACACTTTTACTGGGCCAGAAAGTTCCATGGGACCATAGGCTCTACTCCAATGCTAACGGAACTGTGGACTACTCTACCGGAAAATTCATGCTAGAGGTGGGTACTGATGGAAATGTGGTCCTAGCTACATTCCGATGGGCAGACAGTGGTTACTGGTGGACTGATACTATACAGCCCAACGTTAGTCTTGTGTTCAATGAGAGCACAGCATTGATGTATGTTACCAATTTAACTTCCATCATTTACCGGTTGACCACGAATGTGCCAACACCAGTTGACCGCTATTATCACAGAGCAACCGTAGAAGACACCGGAAATTTCCAGCAGTATATTTACCCTAAGGTAAATGGCAGCGGATGGACAAGTGTTTGGAAAGCGGCCACTGAACCTTGCTCTGTCAATGGTATTTGCGGTGTTTACGGCTACTGTACTTCTCCCGATAATCAAAACGTTACTTGTAGCTGTCTTCCAGGTTATTCTCTCATGGATCCTAATGTTCCTTCCAAAGGATGCTATCCAAATGTCCCACCGCAACAGTGCTCCAAGAGTCCATCTGATGTGACAAATTATAACATAGAAGTGATTGATAATGCGGATATTGTGAACAACTTATTCACAGAAATGACTCGACTGTACAATTCTGATTTGGAGAAATGCAGGGAGGCAGTCATGGATGATTGCTATTGCATGGCAGCTACCCTAACAGCAGACAACGTTTGCCGCAAGAAGAGGATTCCTTTTATGAATGCCAGACAGAGCAGCCCTTCTACTAATGGGATACAAACCATCATCAAGGTTCCAGTGGTAGAGCAAGGGAAGACTGATGGTCTAATAGCGGGGAAGAAAGAGCCTCGCTCTCAGATGATTCTGAAGGTATGCCTTTCAATAAGCACCATGCTTGCTCTCCTGTTTGCTGCCTTTGCAATATATAACCCTATAGCTAGACTATCCAGAGCAAGAAAATTCCTTGCAAATCCTGCAGAGATCAACTTGAAAAAATTCACATATAGGGAGTTGCATGAAGCAACCGATGGGTTCAAAAACAAAATCGGAAGAGGATCATTCGGGACAGTATATAGTGGGATTCTAAATTTGGAAGATAAGCAGATAAAGATTGCTGTGAAGAAGCTGGAGAGAGTGATGGAACAAGGTGACAAAGAATTTCTGACAGAGTTGAGGGTAATAGGCCAAACCCATCACAAAAATTTAGTCAAGCTGTTGGGTTTCTGTGATGAGCAAAGTCATAGACTTCTAGTCTATGAGCTGATGACAAATGGGACTCTGTCTGGTTTTCTATTTTCCGAGGGTGAGAAACCATGCTGGGATCATAGAGCTCAAATTGTTCTGGCAATTGCACGTGGGCTCTCGTATTTACATGATGAATGTGAAACCCAAATCATTCACTGTGATATAAAGCCCCAGAACGTGTTACTTGATAGTCAATTCAATCCCAAAATTGCAGAGTTTGGCCTGGCGAAGCTATTGATGAAAGATCAGACTAGAACAAGCACCAATGTGAGAGGAACAATGGGATACATGGCACCAGAATGGCTCAAAAATGTTCCAGTAACGGCCAAGGTTGATGTCTACAGTTTTGGGGTGCTGCTGCTTGAGATCATATGCTGCAGAAAGCACATAGAGCTGAACCGGGTTGAGGAAGAATCGGAAGAAGATGACCTTATTCTCGTGGATTGGGTTCTGACTTGTGTGAGAAAGGGTAAGCTAGAGGCGGTGGTTAAGCATGATCCAGAAGTGTCGGATGATTTCAAAAGGTTCGAGAGAATGGCAATGGTTGGTTTGTGGTGTGTTCATCCGGACCCAGTTCTACGTCCAACCATGAAGAAGGTGATTCAGATGTTGGAAGGCACAGTGGAGGTGGCCGTCCCACCCCTGGTCCATGCCCCAACATTCTGA 2358 0.455 MAATILLVFSLLLLHFFLGSHAQVKGNISLGSSFDTHTNSSWLSLSGDFAFGFYPLPGGLFLLGIWFNKIPEKTVVWSANRDAPAPAGSSVNLTLAGSLVLTFPNGTVSQISNGASAANSASLQNNGNLVLRNFVSSVVWQSFDNPTDTLLLGQKVPWDHRLYSNANGTVDYSTGKFMLEVGTDGNVVLATFRWADSGYWWTDTIQPNVSLVFNESTALMYVTNLTSIIYRLTTNVPTPVDRYYHRATVEDTGNFQQYIYPKVNGSGWTSVWKAATEPCSVNGICGVYGYCTSPDNQNVTCSCLPGYSLMDPNVPSKGCYPNVPPQQCSKSPSDVTNYNIEVIDNADIVNNLFTEMTRLYNSDLEKCREAVMDDCYCMAATLTADNVCRKKRIPFMNARQSSPSTNGIQTIIKVPVVEQGKTDGLIAGKKEPRSQMILKVCLSISTMLALLFAAFAIYNPIARLSRARKFLANPAEINLKKFTYRELHEATDGFKNKIGRGSFGTVYSGILNLEDKQIKIAVKKLERVMEQGDKEFLTELRVIGQTHHKNLVKLLGFCDEQSHRLLVYELMTNGTLSGFLFSEGEKPCWDHRAQIVLAIARGLSYLHDECETQIIHCDIKPQNVLLDSQFNPKIAEFGLAKLLMKDQTRTSTNVRGTMGYMAPEWLKNVPVTAKVDVYSFGVLLLEIICCRKHIELNRVEEESEEDDLILVDWVLTCVRKGKLEAVVKHDPEVSDDFKRFERMAMVGLWCVHPDPVLRPTMKKVIQMLEGTVEVAVPPLVHAPTF* 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0541 785 ProSitePatterns Serine/Threonine protein kinases active-site signature. 614 626 IPR008271 GO:0004672|GO:0006468
Vvi5g0541 785 Pfam Protein kinase domain 495 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0541 785 FunFam S-receptor-like serine/threonine-protein kinase 463 570 - -
Vvi5g0541 785 Pfam D-mannose binding lectin 74 162 IPR001480 -
Vvi5g0541 785 PIRSF SRK 1 784 IPR024171 GO:0004674
Vvi5g0541 785 CDD B_lectin 45 146 IPR001480 -
Vvi5g0541 785 ProSiteProfiles Protein kinase domain profile. 492 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0541 785 Gene3D Transferase(Phosphotransferase) domain 1 571 775 - -
Vvi5g0541 785 SMART blect_4 33 146 IPR001480 -
Vvi5g0541 785 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 37 778 - -
Vvi5g0541 785 SMART serkin_6 492 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0541 785 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 571 776 - -
Vvi5g0541 785 CDD STKc_IRAK 498 770 - -
Vvi5g0541 785 SUPERFAMILY Protein kinase-like (PK-like) 474 769 IPR011009 -
Vvi5g0541 785 Pfam S-locus glycoprotein domain 241 308 IPR000858 GO:0048544
Vvi5g0541 785 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 204 IPR036426 -
Vvi5g0541 785 Gene3D - 147 282 - -
Vvi5g0541 785 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 147 278 - -
Vvi5g0541 785 ProSitePatterns Protein kinases ATP-binding region signature. 498 524 IPR017441 GO:0005524
Vvi5g0541 785 ProSiteProfiles Bulb-type lectin domain profile. 28 144 IPR001480 -
Vvi5g0541 785 Gene3D - 26 145 IPR036426 -
Vvi5g0541 785 FunFam Serine/threonine-protein kinase 23 145 - -
Vvi5g0541 785 Gene3D Phosphorylase Kinase; domain 1 474 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0541 Vvi-Chr5 4973617 4975974 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0541 444 779 Receptor kinase-like Gene Family AT5G03140 41.499 7.17e-75 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi5g0541 Pkinase 2.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0541 - - vvi:100245961 1557.35