Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi5g0531 | ATGCTGTCGAATCACTTACAGAACGGAATCGAGACTGCGAGGTTAGTGTGGTCTCGGTTGCCCAACTCCGATGATGAGGCGCTGGACGAGGTAGGTCTCTCCAAGAAGAGTGATGGAAGCCGTTCTGAGAGCCTTGATTATGAAGTCATCGAGAATAATGCTTATCGGGAAGAGCAGGCGCAGAGAAGAAAGTTGATGGTTGGATATTATGTGGGCGTGAAGTGGTTCTTTGCCCTCCTTATTGGTATCGGTACTGGATTAGCTGCTGTTTTCATCAATATTTCGGTCGAGAACTTTGCTGGGTGGAAGTTTCAATTAACTTTTTCCATAATACAAAAATCATATGTGGCTGGATTCTTAGTATACATATTATTCAACTTGCTCTTGGTCTTTTCCTCTGTGTATATTGTCACGCAATTCGCACCAGCAGCAGCAGGATCTGGTATTCCTGAAATTAAGGGTTATTTGAATGGAGTTGATACTCATGGTATCCTTCTTTTCAGAACCTTGATTGGAAAGATATTCGGAAGCATTGGTTCTGTGGGAGGTGGTCTAGCCTTGGGAAAAGAAGGTCCTCTTGTTCATACTGGTGCCTGTATTGCTTCTCTGTTTGGTCAAGGTGGATCCACAAAATATCATCTTAGTTCAAGGTGGCTACAAGTTTTTAAGAGTGATCGGGATCGACGCGATCTTGTAACATGTGGGTGTGCAGCTGGAGTGGCTGCTGCTTTCAGAGCTCCAGTTGGAGGTGTATTGTTTGCATTGGAAGAGGTGACATCATGGTGGAGGAGTCAACTCATGTGGCGTGTCTTTTTTACTTCTGCTGTTGTGGCTGTTGTGGTGCGAACTGCAATGGGATGGTGTAAGAGTGGAAAGTGTGGACATTTTGGCTCAGGTGGCTTCATAATATGGGACATATCAGATGGTCAAGAGGACTACTCGTTTGAGGAATTATTGCCAATGGCAATTATTGGTGTTATTGGAGGTCTTCTTGGAGCCTTGTTCAACCAGCTTACTATTTATATTACTTACTGGCGCCGAAATTATTTGCACAAGAAAGGGAGCCGAGTGAAGATGATTGAAGTCTGCCTTGTGTCCCTGATAACTTCAGTTATTTCCTTTGGATTGCCACTTCTAAGAAAATGCAGTCCATGCCCTGAAGTAGAACTTAATTCTGGCATTGAATGCCCCCGTCCTCCAGGGATGTATGGGAATTATGTAAATTTCTATTGTGATAAGGACAACGAGTACAATGATCTTGCAACAATTTTCTTCAATACTCAGGATGATGCCATACGGAATTTATTTAGTGCAAAAACAATTCATGAGTACAGTGCACAAAGCCTATTGACCTTTTTGGTTATGTTTTATTCCTTAGCAGTGCTGACGTTTGGTACTGCTGTTCCAGCTGGTCAATTTGTTCCTGGAATAATGATAGGATCAACCTATGGGCGTCTTGTTGGCATGTTTGTTGTTAACTTCTACAAGAAGCTTAACATTGAAGAGGGAACATATGCTCTACTTGGAGCTGCTTCTTTTCTTGGAGGCTCAATGCGAATGACAGTGTCACTTTGTGTCATTATGGTTGAAATCACAAATAATCTGAAACTTTTACCTCTTATCATGCTTGTTCTTCTTATATCAAAGGCTGTTGGTGATGCCTTTAATGAAGGTTTGTATGAAGAACAGGCACGGTTGAGGGGCATTCCTTTACTCGAATCAAGACCTAAGTACCAAATGAGGAAAATGACTGCAAAAGAGGCCTGTGGCAATAAAAAGGTTGTATATTTCCCTCGTGTTGTTAAGGTTGCGGATGTAGTTTCTATTTTGCGAAGCAACGAGCATAATGGTTTCCCTGTAATAGATCACACAAGAAATGGGGAAAGCCTTGTAATAGGACTCATGCTTCGAAGTCACTTATTGGTGCTTCTGCAGTCCAAGGTAGATTTTCAGCATAGCCCTTTGCCCTCTGATCCAAGAGGTGGAGGCAAGCCAATCAGTAAAGGAATCTCCATAGATGATATTCATCTAAGTTCAGATGACCTGGAAATGTATATAGATCTTGCTCCATTTTTGAACCCATCCCCTTACGTTGTCCCTGAAGATATGTCTTTGTCAAAGGTATACAATCTTTTCCGCCAACTAGGATTGAGGCATATACTTGTTGTCCCCCGTGCCTCTCGTGTTATTGGTTTGATTACCAGAAAGGATTTGTTAATTGAGGATAATGAGAATTCAGAGACAGTGGAGCTTCAATCGACTAGTAGCTCGACGGCAAGATAG | 2283 | 0.4231 | MLSNHLQNGIETARLVWSRLPNSDDEALDEVGLSKKSDGSRSESLDYEVIENNAYREEQAQRRKLMVGYYVGVKWFFALLIGIGTGLAAVFINISVENFAGWKFQLTFSIIQKSYVAGFLVYILFNLLLVFSSVYIVTQFAPAAAGSGIPEIKGYLNGVDTHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLFGQGGSTKYHLSSRWLQVFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAVVAVVVRTAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFEELLPMAIIGVIGGLLGALFNQLTIYITYWRRNYLHKKGSRVKMIEVCLVSLITSVISFGLPLLRKCSPCPEVELNSGIECPRPPGMYGNYVNFYCDKDNEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYSLAVLTFGTAVPAGQFVPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKLLPLIMLVLLISKAVGDAFNEGLYEEQARLRGIPLLESRPKYQMRKMTAKEACGNKKVVYFPRVVKVADVVSILRSNEHNGFPVIDHTRNGESLVIGLMLRSHLLVLLQSKVDFQHSPLPSDPRGGGKPISKGISIDDIHLSSDDLEMYIDLAPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHILVVPRASRVIGLITRKDLLIEDNENSETVELQSTSSSTAR* | 761 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi5g0531 | 760 | SMART | cbs_1 | 695 | 743 | IPR000644 | - | |
Vvi5g0531 | 760 | SMART | cbs_1 | 593 | 645 | IPR000644 | - | |
Vvi5g0531 | 760 | ProSiteProfiles | CBS domain profile. | 692 | 748 | IPR000644 | - | |
Vvi5g0531 | 760 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 30 | 744 | - | - | |
Vvi5g0531 | 760 | Pfam | CBS domain | 693 | 739 | IPR000644 | - | |
Vvi5g0531 | 760 | PRINTS | Plant CLC chloride channel signature | 258 | 266 | IPR002251 | GO:0005247|GO:0006821|GO:0016020 | |
Vvi5g0531 | 760 | PRINTS | Plant CLC chloride channel signature | 48 | 56 | IPR002251 | GO:0005247|GO:0006821|GO:0016020 | |
Vvi5g0531 | 760 | PRINTS | Plant CLC chloride channel signature | 290 | 297 | IPR002251 | GO:0005247|GO:0006821|GO:0016020 | |
Vvi5g0531 | 760 | PRINTS | Plant CLC chloride channel signature | 420 | 436 | IPR002251 | GO:0005247|GO:0006821|GO:0016020 | |
Vvi5g0531 | 760 | PRINTS | Plant CLC chloride channel signature | 272 | 282 | IPR002251 | GO:0005247|GO:0006821|GO:0016020 | |
Vvi5g0531 | 760 | CDD | CBS_pair_voltage-gated_CLC_euk_bac | 591 | 739 | - | - | |
Vvi5g0531 | 760 | FunFam | Chloride channel protein | 684 | 760 | - | - | |
Vvi5g0531 | 760 | CDD | ClC_6_like | 43 | 572 | - | - | |
Vvi5g0531 | 760 | SUPERFAMILY | CBS-domain pair | 577 | 739 | IPR046342 | - | |
Vvi5g0531 | 760 | PRINTS | Chloride channel signature | 559 | 573 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Vvi5g0531 | 760 | PRINTS | Chloride channel signature | 468 | 488 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Vvi5g0531 | 760 | PRINTS | Chloride channel signature | 173 | 192 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Vvi5g0531 | 760 | PRINTS | Chloride channel signature | 521 | 540 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Vvi5g0531 | 760 | PRINTS | Chloride channel signature | 142 | 159 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Vvi5g0531 | 760 | PRINTS | Chloride channel signature | 503 | 519 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Vvi5g0531 | 760 | PRINTS | Chloride channel signature | 237 | 256 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Vvi5g0531 | 760 | Gene3D | Clc chloride channel | 68 | 573 | - | - | |
Vvi5g0531 | 760 | Gene3D | - | 577 | 745 | IPR046342 | - | |
Vvi5g0531 | 760 | SUPERFAMILY | Clc chloride channel | 54 | 574 | IPR014743 | - | |
Vvi5g0531 | 760 | FunFam | Chloride channel ClC3 | 66 | 383 | - | - | |
Vvi5g0531 | 760 | Pfam | Voltage gated chloride channel | 130 | 552 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi5g0531 | Vvi-Chr5 | 4831390 | 4846158 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi5g0531 | 1 | 760 | Ion Channels | AT5G26240 | 82.513 | 0.0 | 1231 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi5g0531 | K05016 | - | vvi:100261408 | 1436.78 |