Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0531 ATGCTGTCGAATCACTTACAGAACGGAATCGAGACTGCGAGGTTAGTGTGGTCTCGGTTGCCCAACTCCGATGATGAGGCGCTGGACGAGGTAGGTCTCTCCAAGAAGAGTGATGGAAGCCGTTCTGAGAGCCTTGATTATGAAGTCATCGAGAATAATGCTTATCGGGAAGAGCAGGCGCAGAGAAGAAAGTTGATGGTTGGATATTATGTGGGCGTGAAGTGGTTCTTTGCCCTCCTTATTGGTATCGGTACTGGATTAGCTGCTGTTTTCATCAATATTTCGGTCGAGAACTTTGCTGGGTGGAAGTTTCAATTAACTTTTTCCATAATACAAAAATCATATGTGGCTGGATTCTTAGTATACATATTATTCAACTTGCTCTTGGTCTTTTCCTCTGTGTATATTGTCACGCAATTCGCACCAGCAGCAGCAGGATCTGGTATTCCTGAAATTAAGGGTTATTTGAATGGAGTTGATACTCATGGTATCCTTCTTTTCAGAACCTTGATTGGAAAGATATTCGGAAGCATTGGTTCTGTGGGAGGTGGTCTAGCCTTGGGAAAAGAAGGTCCTCTTGTTCATACTGGTGCCTGTATTGCTTCTCTGTTTGGTCAAGGTGGATCCACAAAATATCATCTTAGTTCAAGGTGGCTACAAGTTTTTAAGAGTGATCGGGATCGACGCGATCTTGTAACATGTGGGTGTGCAGCTGGAGTGGCTGCTGCTTTCAGAGCTCCAGTTGGAGGTGTATTGTTTGCATTGGAAGAGGTGACATCATGGTGGAGGAGTCAACTCATGTGGCGTGTCTTTTTTACTTCTGCTGTTGTGGCTGTTGTGGTGCGAACTGCAATGGGATGGTGTAAGAGTGGAAAGTGTGGACATTTTGGCTCAGGTGGCTTCATAATATGGGACATATCAGATGGTCAAGAGGACTACTCGTTTGAGGAATTATTGCCAATGGCAATTATTGGTGTTATTGGAGGTCTTCTTGGAGCCTTGTTCAACCAGCTTACTATTTATATTACTTACTGGCGCCGAAATTATTTGCACAAGAAAGGGAGCCGAGTGAAGATGATTGAAGTCTGCCTTGTGTCCCTGATAACTTCAGTTATTTCCTTTGGATTGCCACTTCTAAGAAAATGCAGTCCATGCCCTGAAGTAGAACTTAATTCTGGCATTGAATGCCCCCGTCCTCCAGGGATGTATGGGAATTATGTAAATTTCTATTGTGATAAGGACAACGAGTACAATGATCTTGCAACAATTTTCTTCAATACTCAGGATGATGCCATACGGAATTTATTTAGTGCAAAAACAATTCATGAGTACAGTGCACAAAGCCTATTGACCTTTTTGGTTATGTTTTATTCCTTAGCAGTGCTGACGTTTGGTACTGCTGTTCCAGCTGGTCAATTTGTTCCTGGAATAATGATAGGATCAACCTATGGGCGTCTTGTTGGCATGTTTGTTGTTAACTTCTACAAGAAGCTTAACATTGAAGAGGGAACATATGCTCTACTTGGAGCTGCTTCTTTTCTTGGAGGCTCAATGCGAATGACAGTGTCACTTTGTGTCATTATGGTTGAAATCACAAATAATCTGAAACTTTTACCTCTTATCATGCTTGTTCTTCTTATATCAAAGGCTGTTGGTGATGCCTTTAATGAAGGTTTGTATGAAGAACAGGCACGGTTGAGGGGCATTCCTTTACTCGAATCAAGACCTAAGTACCAAATGAGGAAAATGACTGCAAAAGAGGCCTGTGGCAATAAAAAGGTTGTATATTTCCCTCGTGTTGTTAAGGTTGCGGATGTAGTTTCTATTTTGCGAAGCAACGAGCATAATGGTTTCCCTGTAATAGATCACACAAGAAATGGGGAAAGCCTTGTAATAGGACTCATGCTTCGAAGTCACTTATTGGTGCTTCTGCAGTCCAAGGTAGATTTTCAGCATAGCCCTTTGCCCTCTGATCCAAGAGGTGGAGGCAAGCCAATCAGTAAAGGAATCTCCATAGATGATATTCATCTAAGTTCAGATGACCTGGAAATGTATATAGATCTTGCTCCATTTTTGAACCCATCCCCTTACGTTGTCCCTGAAGATATGTCTTTGTCAAAGGTATACAATCTTTTCCGCCAACTAGGATTGAGGCATATACTTGTTGTCCCCCGTGCCTCTCGTGTTATTGGTTTGATTACCAGAAAGGATTTGTTAATTGAGGATAATGAGAATTCAGAGACAGTGGAGCTTCAATCGACTAGTAGCTCGACGGCAAGATAG 2283 0.4231 MLSNHLQNGIETARLVWSRLPNSDDEALDEVGLSKKSDGSRSESLDYEVIENNAYREEQAQRRKLMVGYYVGVKWFFALLIGIGTGLAAVFINISVENFAGWKFQLTFSIIQKSYVAGFLVYILFNLLLVFSSVYIVTQFAPAAAGSGIPEIKGYLNGVDTHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLFGQGGSTKYHLSSRWLQVFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAVVAVVVRTAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFEELLPMAIIGVIGGLLGALFNQLTIYITYWRRNYLHKKGSRVKMIEVCLVSLITSVISFGLPLLRKCSPCPEVELNSGIECPRPPGMYGNYVNFYCDKDNEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYSLAVLTFGTAVPAGQFVPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKLLPLIMLVLLISKAVGDAFNEGLYEEQARLRGIPLLESRPKYQMRKMTAKEACGNKKVVYFPRVVKVADVVSILRSNEHNGFPVIDHTRNGESLVIGLMLRSHLLVLLQSKVDFQHSPLPSDPRGGGKPISKGISIDDIHLSSDDLEMYIDLAPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHILVVPRASRVIGLITRKDLLIEDNENSETVELQSTSSSTAR* 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0531 760 SMART cbs_1 695 743 IPR000644 -
Vvi5g0531 760 SMART cbs_1 593 645 IPR000644 -
Vvi5g0531 760 ProSiteProfiles CBS domain profile. 692 748 IPR000644 -
Vvi5g0531 760 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 30 744 - -
Vvi5g0531 760 Pfam CBS domain 693 739 IPR000644 -
Vvi5g0531 760 PRINTS Plant CLC chloride channel signature 258 266 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi5g0531 760 PRINTS Plant CLC chloride channel signature 48 56 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi5g0531 760 PRINTS Plant CLC chloride channel signature 290 297 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi5g0531 760 PRINTS Plant CLC chloride channel signature 420 436 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi5g0531 760 PRINTS Plant CLC chloride channel signature 272 282 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi5g0531 760 CDD CBS_pair_voltage-gated_CLC_euk_bac 591 739 - -
Vvi5g0531 760 FunFam Chloride channel protein 684 760 - -
Vvi5g0531 760 CDD ClC_6_like 43 572 - -
Vvi5g0531 760 SUPERFAMILY CBS-domain pair 577 739 IPR046342 -
Vvi5g0531 760 PRINTS Chloride channel signature 559 573 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi5g0531 760 PRINTS Chloride channel signature 468 488 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi5g0531 760 PRINTS Chloride channel signature 173 192 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi5g0531 760 PRINTS Chloride channel signature 521 540 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi5g0531 760 PRINTS Chloride channel signature 142 159 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi5g0531 760 PRINTS Chloride channel signature 503 519 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi5g0531 760 PRINTS Chloride channel signature 237 256 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi5g0531 760 Gene3D Clc chloride channel 68 573 - -
Vvi5g0531 760 Gene3D - 577 745 IPR046342 -
Vvi5g0531 760 SUPERFAMILY Clc chloride channel 54 574 IPR014743 -
Vvi5g0531 760 FunFam Chloride channel ClC3 66 383 - -
Vvi5g0531 760 Pfam Voltage gated chloride channel 130 552 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0531 Vvi-Chr5 4831390 4846158 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0531 1 760 Ion Channels AT5G26240 82.513 0.0 1231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0531 K05016 - vvi:100261408 1436.78