Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0524 ATGGAGCTTCAGAAGCGCCAAGATCAGGGCCAGCCCGAGAGGAAGGGGCAAAAACGGAAACTGGAGGAAGAATTCGAAGAGGAGCGGGAGATCTCCGTGGCGCCGTCCGGCGAGGCGCACCAGGCGTTATCCTGCGAGGTCAGTGCGCAGGTTAATATCCTCAACACAACCTTTTCGTGGAAAGAAGCCGATCGAGCCGCCGCTAAGAGAGCCACTCACGTACTCGCCGAGCTTGCTAAGAACGAGGAAGTTGTGAATGTAATCGTCGACGGTGGGGCTGTTCCGGCACTGGTGAAGCATCTGCAGGCACCGCCTTCCAGCGATGGCGACCATGACCAGAGGCCCTTCGAGCACGAGGTTGAGAAAGGGAGTGCTTTTGCTCTGGGTCTCCTTGCTGTAAAGCCAGAGCATCAGCAACTCATAGTTGATAATGGTGCTTTGTCTCATCTAGTGGATCTTTTAAAGAGGCACAGAGATGGTTCTAACTCTCGAGCTGTCAATAGTGTCATTCGAAGAGCAGCCGATGCTGTCACTAACCTTGCTCATGAGAATAGCAGTATTAAAACCAGAGTCAGGATGGAAGGCGGGATACCACCCCTTGTTCAGTTACTTGAATTTGCTGATACAAAGGTGCAACGGGCAGCTGCTGGGGCACTGAGAACCCTGGCATTTAAAAATGATGAAAATAAAAATCAGATTGTAGAATGTAATGCTCTCCCTACCCTGATTCTAATGCTTCGATCTGAGGATGCTGCTATACATTATGAAGCAGTTGGTGTAATTGGAAATTTGGTACACTCTTCGCCAAACATAAAGAAAGAAGTGCTTTTGGCTGGAGCTTTACAGCCTGTTATAGGATTACTTAGTTCGTGCTGCTCTGAGAGCCAAAGGGAGGCAGCTTTGTTACTTGGACAATTTGCTGCAACTGATTCAGATTGCAAGGTGCATATTGCACAGAGAGGTGCTGTGCGACCTTTGATTGAGATGCTTCAATCTGCAGATGTACAGCTGAGGGAAATGTCAGCCTTTGCATTGGGGAGATTGGCACAGGACACACACAATCAAGCCGGTATTGCTCATAATGGCGGTCTAGTCCCATTATTGAAGCTTCTTGATTCAAAAAATGGATCACTGCAACATAATGCTGCATTTGCACTTTATGGCCTTGCAGATAATGAGGACAATGTATCTGATTTTATCAAGGTGGGAGGGGTTCAGAAGCTGCAGGATGGAGAATTTATTGTTCAAGCAACAAAAGATTGTGTAGCCAAGACATTGAAAAGATTAGAGGAAAAGATTCATGGAAGAGTTTTGAACCATTTGTTATATCTGATGCGTGTATCTGAGAAGGCTGTTCAAAGACGAGTTGCTTTAGCTCTTGCTCATCTTTGTTCTGCAGATGATCAGAGGACAATCTTCATTGATAACAATGGATTGGAGTTGCTTCTTGGGCTTCTTGGTTCTTCAAGCCCAAAGCAGCAACTTGATGGTTCTGTGGCTCTCTACAAATTGGCCAACAAAGCCATGACTCTCTCTCCTGTGGATGCAGCTCCTCCTTCTCCCACACCCCAGGTCTATTTGGGAGAGCAATATGTAAACAGTGCTACATTGTCCGATGTTACCTTTCTAGTTGGAGGTAAAAGGTTCTATGCTCACCGAATTTGCCTTTTGGCATCTTCAGATGCATTCCGTGCAATGTTTGATGGTGGTTATCGGGAGAAGGATGCAAGAGATATAGAGATCCCGAATATCAGATGGGAGGTTTTTGAGTTGATGATGAGATTTATATACACTGGATCTGTAGAAATTACATTGGATATTGCACAAGATCTCCTCAGAGCTGCTGATCAGTATCTCTTGGAGGGACTAAAGCGTCTCTGTGAGTATACCATTGCCCAGGATATATCACTGGAAAATGTTTCAAGTATGTATGAACTTTCAGAAGCCTTCCATGCTATTTCATTAAGACACACATGCATCCTGTTTATCTTGGAGCAGTTCAGTAAACTGAGTTCTAGGCCCGGGCATTCTCATCTGATCCAACGAATAATTCCAGAGATCCGCACCTACTTTGCTAAAGCACTTACCAAGCCTAACCCACATAATTCGAGGCTATAA 2118 0.4561 MELQKRQDQGQPERKGQKRKLEEEFEEEREISVAPSGEAHQALSCEVSAQVNILNTTFSWKEADRAAAKRATHVLAELAKNEEVVNVIVDGGAVPALVKHLQAPPSSDGDHDQRPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVDLLKRHRDGSNSRAVNSVIRRAADAVTNLAHENSSIKTRVRMEGGIPPLVQLLEFADTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIAQRGAVRPLIEMLQSADVQLREMSAFALGRLAQDTHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIKVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKAVQRRVALALAHLCSADDQRTIFIDNNGLELLLGLLGSSSPKQQLDGSVALYKLANKAMTLSPVDAAPPSPTPQVYLGEQYVNSATLSDVTFLVGGKRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVEITLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILFILEQFSKLSSRPGHSHLIQRIIPEIRTYFAKALTKPNPHNSRL* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0524 705 Gene3D Potassium Channel Kv1.1; Chain A 522 664 IPR011333 -
Vvi5g0524 705 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 145 195 IPR000225 GO:0005515
Vvi5g0524 705 SMART BTB_4 538 635 IPR000210 GO:0005515
Vvi5g0524 705 Pfam Armadillo/beta-catenin-like repeat 226 265 IPR000225 GO:0005515
Vvi5g0524 705 Pfam Armadillo/beta-catenin-like repeat 191 223 IPR000225 GO:0005515
Vvi5g0524 705 SUPERFAMILY POZ domain 530 632 IPR011333 -
Vvi5g0524 705 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 321 363 IPR000225 GO:0005515
Vvi5g0524 705 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 362 404 IPR000225 GO:0005515
Vvi5g0524 705 Gene3D - 208 415 IPR011989 -
Vvi5g0524 705 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 92 146 IPR000225 GO:0005515
Vvi5g0524 705 MobiDBLite consensus disorder prediction 1 34 - -
Vvi5g0524 705 FunFam Armadillo/beta-catenin repeat family protein 529 673 - -
Vvi5g0524 705 Pfam BTB/POZ domain 531 633 IPR000210 GO:0005515
Vvi5g0524 705 SMART arm_5 351 391 IPR000225 GO:0005515
Vvi5g0524 705 SMART arm_5 268 308 IPR000225 GO:0005515
Vvi5g0524 705 SMART arm_5 466 506 IPR000225 GO:0005515
Vvi5g0524 705 SMART arm_5 134 182 IPR000225 GO:0005515
Vvi5g0524 705 SMART arm_5 226 266 IPR000225 GO:0005515
Vvi5g0524 705 SMART arm_5 184 224 IPR000225 GO:0005515
Vvi5g0524 705 SMART arm_5 81 133 IPR000225 GO:0005515
Vvi5g0524 705 SMART arm_5 310 350 IPR000225 GO:0005515
Vvi5g0524 705 SUPERFAMILY ARM repeat 62 410 IPR016024 -
Vvi5g0524 705 SUPERFAMILY ARM repeat 436 609 IPR016024 -
Vvi5g0524 705 CDD BTB_POZ_ARIA_plant 525 640 - -
Vvi5g0524 705 Gene3D - 38 207 IPR011989 -
Vvi5g0524 705 MobiDBLite consensus disorder prediction 1 38 - -
Vvi5g0524 705 Gene3D - 416 521 IPR011989 -
Vvi5g0524 705 ProSiteProfiles BTB domain profile. 538 605 IPR000210 GO:0005515
Vvi5g0524 705 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 699 IPR044282 -
Vvi5g0524 705 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 237 279 IPR000225 GO:0005515
Vvi5g0524 705 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 195 230 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0524 Vvi-Chr5 4748334 4764277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0524 197 487 U-box Gene Family AT3G46510 26.117 5.49e-14 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vvi5g0524 BTB 3.7e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0524 - - vvi:100249437 1347.8