Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0518 ATGGTGGCTCAGCTGGAGAGCCATCCCACTCTCGACCCTGTCCAGAAGGCCAAGACCCTCATCTGTGCCCTCAACCTCATCTCCCGCAACCTCCCTCTCCCTCCCGACGTATTCAACGCCGTTTCCTCTATCTACCATGCCGATGACCTACTCGATCGCGCCGACGTCGATACCCTCGATACTCCGTCCGAGAAGGTTTCGGATGGCCCTGGGATCTCTGGTGGAGGAGATTTGATAATAGACCTTGATGATGCACTGGTCAAGCAACGACCAAATTGCACGTCAGGTATTGAATTGACAAAATCAAGGGAAAATCGTCTGCAGAGTCACATTCAACATCGATTAACTCAACTTGAAGAGTTGCCTTCAACTAGAGGTGAGGACCTGCAGACAAAGTGCTTGCTCGAACTCTATGGGCTAAAGCTAGTGGAATTGCAAAGCAAGGTTCGTTCTGATGTGAGCTCAGAGTATTGGCTTCGGATGAATTGTGCATATCCCGACAAGCAATTATTTGATTGGGGCATGATGCGACTGCGGCGTCCTCTATATGGAGTAGGAGATGCTTTTGCAATGGAAGCTGATGATCAATTCAGGAAGAAACGAGATGCTGAGAGGCTGTCGAGGTTAGAGGAGGAGGAAAAGAACCGTTTGGAAACTAGAAAAAGAAAATTCTTCGCAGAAATACTTAACGCTGTTCGTGAATTTCAATTGCAAGTTCAAGCTTCTTTGAAACGTCGTAAACAACGGAATGATGGTGTCCAGGCATGGCATGGAAGGCAAAGGCAACGTGCAACAAGGGCGGAGAAACTAAGGTTCCAAGCGTTGAAAGCTGATGATCAAGAAGCATACATGAGAATGGTAAAGGAGAGCAAGAATGAACGATTAACAATGCTTCTTAAAAAAACAAACGATCTCCTTGTTGATTTGGGAGCTGCTGTTCAACGTCAAAAAGGTGCAGAACAATCAGATGGCATTGAGACACTGAAAAGCCCTGAACCTGATTTGCCAGATTTATCAGCTTCCAAGAGTGAAACACCTGATTTACTTCCTGAGGAAGATGTAGAGATACTTAACACAGATCCTGGTCCCAATGGTAAAACTGGTGATTTACTTGAAGGTCAAAGGCAGTATAATTCGGTCATTCATTCAATTCAGGAAAAGGTAACTGAGCAACCAGCTATGCTTCAAGGTGGAGAATTAAGACCATACCAGTTAGAAGGGCTTCAATGGATGCTCTCTTTGTTCAATAACAATCTGAATGGAATTTTAGCTGATGAGATGGGGTTGGGGAAGACAATTCAAACAATTTCACTGATTGCATATCTCGTGGAGAACAAAGGTGTAACTGGGCCCCATTTGATTGTGGCTCCAAAGGCTGTGTTACCAAATTGGGTAAATGAATTCTCAACATGGGCTCCTAGCATTGCAGCTGTTCTTTATGATGGGCGTCTAGATGAGCGGAAGGCATTGAGGGAAGAGATATCAGGAGAAGGGAAATTCAATGTGCTGATCACCCACTATGATCTTATTATGAGAGATAAAGCATTTTTGAAGAAAATTGACTGGCACTACATGATTGTTGATGAAGGACATCGGTTAAAAAATCACGAGTGTGCCCTTGCAAGGACTCTTGTCTCAGGCTATCAGATTCAACGTAGACTTCTGTTAACTGGTACCCCGATACAGAATAGCTTACAGGAATTATGGTCCCTGCTTAATTTTCTTCTTCCGAGCATTTTTAATTCAGTTACGAATTTCGAGGAGTGGTTTAATGCACCCTTTGCAGATCGATCTGATGTTTCTCTTACAGATGAAGAAGAGTTACTGATCATTCACCGGTTGCATCATGTTATAAGGCCATTCATATTGAGGAGGAAGAAAGATGAGGTGGAAAAGTACCTTCCTGGGAAAACCCAGGTCATATTGAAATGTGATATGTCAGCCTGGCAGAAAGCATATTATCATCAAGTAACAGACTTGGGCAGGGTTGGATTGGATACTGGATCTGGGAAGTCAAAAAGTTTACAGAACCTGTCCATGCAACTCAGAAAGTGTTGTAACCACCCATACCTATTTGTTGGAGATTATAATATCTGGCAGAAAAAGGAGGAGATGGTCAGAGCATCGGGGAAATTTGAGCTACTTGATCGTTTACTCCCAAAACTTCAGAAAGCAGGGCATAGAGTGCTGCTTTTCTCACAGATGACTCGCCTTATGGACATTCTAGAAATCTATCTACAAATGAATGAAATCAAGTATCTGAGACTGGATGGTTCAACAAAGACCGAGGAAAGAGGGACCAAGCTAAAGCAATTTAATGCTCCAGACTCTCCTTACTTCATGTTTCTTTTGAGCACTCGTGCTGGAGGTCTTGGTCTGAACTTACAAACGGCAGACACTGTGATAATTTTTGACAGCGATTGGAACCCTCAAATGGACCAACAAGCAGAGGATCGGGCCCATCGTATAGGGCAAAAGAAAGAGGTAAGAGTTTTTGTGTTGGTAAGTGTTGGATCAATTGAGGAGGTAATCTTGGAGCGTGCAAAACAAAAGATGGGCATTGATGCCAAGGTCATCCAGGCAGGATTGTTCAATACAACTTCCACAGCTCAGGACAGAAGAGAAATGTTAGAGGAGATCATGCGTAGAGGTACAAATTCTCTTGGAGCAGATGTTCCAAGTGAAAGAGAGATCAACCGACTTGCAGCTCGATCAGATGAGGAGTTCTGGATGTTTGAGAAGATGGACGAAGAGAGAAGACAGAAGGAAAATTACAGATCTCGTCTGATGGAAGAACATGAGGTACCTGAATGGGCATATTCCACACCTGATGGCAAGGAAGAGAAATCCAAAGGTTTTGAACATGATGCCAGCAAAATTACAGGAAAGCGACGAAGAAAAGAGGTTGTTTATGCTGATTCACTTAGTGATTTACAATGGATGAAAGCTGTTGAAAGTGGGGAAGACATATCAAGACTTTCAGTTAAGGGAAAGAGGAGGGAGCATCTTCCTTCTGAGGCTAATGAATCGGATAGTGATAAAATAGGGGGAGAACAAAAGGTCCTTGAATTGAGAAGTGAAAATGTGTCTATGACAAGTGAAGGAACAAGTGAAGATACTTTCAGCTTGGCCCCGAAGAGGTTGAAGTCTGAAGGGGCAAATTCTGATCAGCGTACTGGAGGAGGCAGTTGGAATGGGCATATCCCCACATGGCAGACGCATACAAGGAGGAGATCAAGCTATGTTGTCCAAAGTTCATCTTCTGATGCTAGGGGCCAGAATTCTAACAGCAGAGGAAATGGATGGAGTTGA 3312 0.4372 MVAQLESHPTLDPVQKAKTLICALNLISRNLPLPPDVFNAVSSIYHADDLLDRADVDTLDTPSEKVSDGPGISGGGDLIIDLDDALVKQRPNCTSGIELTKSRENRLQSHIQHRLTQLEELPSTRGEDLQTKCLLELYGLKLVELQSKVRSDVSSEYWLRMNCAYPDKQLFDWGMMRLRRPLYGVGDAFAMEADDQFRKKRDAERLSRLEEEEKNRLETRKRKFFAEILNAVREFQLQVQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTMLLKKTNDLLVDLGAAVQRQKGAEQSDGIETLKSPEPDLPDLSASKSETPDLLPEEDVEILNTDPGPNGKTGDLLEGQRQYNSVIHSIQEKVTEQPAMLQGGELRPYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLVENKGVTGPHLIVAPKAVLPNWVNEFSTWAPSIAAVLYDGRLDERKALREEISGEGKFNVLITHYDLIMRDKAFLKKIDWHYMIVDEGHRLKNHECALARTLVSGYQIQRRLLLTGTPIQNSLQELWSLLNFLLPSIFNSVTNFEEWFNAPFADRSDVSLTDEEELLIIHRLHHVIRPFILRRKKDEVEKYLPGKTQVILKCDMSAWQKAYYHQVTDLGRVGLDTGSGKSKSLQNLSMQLRKCCNHPYLFVGDYNIWQKKEEMVRASGKFELLDRLLPKLQKAGHRVLLFSQMTRLMDILEIYLQMNEIKYLRLDGSTKTEERGTKLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTNSLGADVPSEREINRLAARSDEEFWMFEKMDEERRQKENYRSRLMEEHEVPEWAYSTPDGKEEKSKGFEHDASKITGKRRRKEVVYADSLSDLQWMKAVESGEDISRLSVKGKRREHLPSEANESDSDKIGGEQKVLELRSENVSMTSEGTSEDTFSLAPKRLKSEGANSDQRTGGGSWNGHIPTWQTHTRRRSSYVVQSSSSDARGQNSNSRGNGWS* 1104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0518 1103 FunFam Chromatin structure-remodeling complex protein SYD 391 634 - -
Vvi5g0518 1103 Gene3D - 391 634 IPR038718 -
Vvi5g0518 1103 Pfam Helicase conserved C-terminal domain 711 824 IPR001650 -
Vvi5g0518 1103 SMART ultradead3 396 589 IPR014001 -
Vvi5g0518 1103 SMART helicmild6 740 824 IPR001650 -
Vvi5g0518 1103 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 375 625 IPR027417 -
Vvi5g0518 1103 Gene3D - 635 855 IPR027417 -
Vvi5g0518 1103 SMART SnAC_2 917 981 IPR029295 GO:0042393
Vvi5g0518 1103 Coils Coil 200 223 - -
Vvi5g0518 1103 Coils Coil 915 935 - -
Vvi5g0518 1103 MobiDBLite consensus disorder prediction 994 1021 - -
Vvi5g0518 1103 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 714 881 IPR001650 -
Vvi5g0518 1103 PANTHER SNF2/RAD54 HELICASE FAMILY 190 1005 - -
Vvi5g0518 1103 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 627 878 IPR027417 -
Vvi5g0518 1103 FunFam Probable ATP-dependent DNA helicase CHR12 631 930 - -
Vvi5g0518 1103 MobiDBLite consensus disorder prediction 1054 1103 - -
Vvi5g0518 1103 MobiDBLite consensus disorder prediction 994 1103 - -
Vvi5g0518 1103 Pfam Snf2-ATP coupling, chromatin remodelling complex 917 981 IPR029295 GO:0042393
Vvi5g0518 1103 CDD SF2_C_SNF 701 835 - -
Vvi5g0518 1103 MobiDBLite consensus disorder prediction 1025 1040 - -
Vvi5g0518 1103 Pfam SNF2-related domain 403 691 IPR000330 GO:0005524|GO:0140658
Vvi5g0518 1103 MobiDBLite consensus disorder prediction 317 367 - -
Vvi5g0518 1103 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 412 578 IPR014001 -
Vvi5g0518 1103 MobiDBLite consensus disorder prediction 941 966 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0518 Vvi-Chr5 4705947 4727863 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0518 707 852 RAD5 or RAD16-like Gene Family AT5G43530 37.333 7.69e-20 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vvi5g0518 SNF2_N 3.5e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0518 - - vvi:100264840 2155.95