Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0516 ATGGCGATGGTCCTTGAGGGCATTATCGGTCTCGCTCTCCTTATGCTGCTCTTCATCGCCCTCGTCCTCCTCTTCGTCTGTAAGCCATGGCGCTTCTTCTTCTCTCCTAATCGCACTCGCACCATCAAGGTTGGTGATCTAGAGAGACCTCTTGTTCCAGAGGACTTGGATCTGGTTCCAAACCAAAGCAATGAATTGGGGAGAAGTTATGATCTAGGGGGATCGTGTGTTCAATCAGAAGGGTATTTGAACTCGCCACGAACACATGGGCTTGTGCATAAACAGAGGATTCCCCCTGCACCTCCACATTTGGTCCAAGATGGTAGCTTGATCCTAGATCTAATTTCTGATGCTTCAGAAGATGTTTTGGTTGGTCAGACGCTCAAGCGTCCATTTATGTTAAACCACTCAATTGAAGAGCAAAGCCATATTGGAAAGGAAGAGCTAAGTTATGACTTGAAATTTGATTCAGAGAATGATAGATTTCAAGCGTTTGTTAGGCAAGATATTGTTGATCAAAGAAGCAGCCTCACTTTGGAGGTTATCTCTGGTCCTTCTCGAGGGGATCGGTGTTCTATATCATCAACAAATACTTCTAGACTTCCAATGACCCTTGGAAGGGTTTCTCCAAGTGATTTATTGGTGAAAGATTCAGAGGTCTCAGGGAAGCATGCTCTGATAAACTGGAATTTAAATAAATTGAAGTGGGAACTGGTGGACATGGGTAGCCTTAATGGAACACTCTTGAATTCCCAATCTGTCAACCATCCTGATTCTGGAATGAGGCATTGGGGTGATCCAATTGAGCTTGCAAGTGGAGACATAATAACTCTTGGGACAACCTCAAAAATACGTGTTCAAATTGCATCTGAAACCAAATGTCAGGTCCCTTTTGGACTTGGTATAGCATCAGATCCCATGGCTTTGCGTCGCGGAGGAAAGAAGCTTCCTATGGAAGATGTGTGCTATTACCATTGGCCACTTCCTGGGACTGATCAGTTTGGACTGTTTGGCATCTGTGATGGACATGGTGGAGCAGCAGCTGCAAAATCTGCCAGCAAAATTCTGCCCGAGATGGTTGCTTCGATATTGTCAGATTCATTGAAGAGGGAGAAGGTTTTATCACGACAGGATGCTTCAGAAATCCTTAGGGATGCAGTTTCACGGACAGAAGCATTCATGAATCACCATTATGAGGGTTGTACTGCTACGGTGCTTTTGGTTTGGGCTGATGGTCATGAAAATTTCTATGCGCAATGTGCAAACGTTGGAGATTCAGCTTGTGTTATGAATGTTGATGGGAAGCAGATTAAGATGACGGAAGACCATAGAGTAACTAGTTATTCTGAAAGACAACGCATAAAAGAAATAGGAGAACCGTTAAAAGATGGGGAAACACGCCTATGTGGTCTAAACCTCGCTCGGATGCTTGGAGACAAATATATGAAAGAGCAAGATTCCCGCTTCAGTTCAGAGCCTTACATAAGTCAGGTTGTGCATATAAATCAAGCAAGCGGGGCCTTTGCACTACTGGCAAGTGATGGCTTTTGGGATGTTATTAGCCCCAAGAAGGCAATGCAGCTAGTGTTTCAGATGAAGGAGAGATGCTCTCCGGATAGGGAGAACTCGGCGGAGAAGGTTGCAAATTTTCTGTTGAGTGAGGCTAGAACACTGCGAACAAAGGATAACACCTCTATAATTTTCTTAGATTTTGATACTAACTCTAGAAAATCTTCTTGTAAACTTGATCCTTGA 1755 0.4393 MAMVLEGIIGLALLMLLFIALVLLFVCKPWRFFFSPNRTRTIKVGDLERPLVPEDLDLVPNQSNELGRSYDLGGSCVQSEGYLNSPRTHGLVHKQRIPPAPPHLVQDGSLILDLISDASEDVLVGQTLKRPFMLNHSIEEQSHIGKEELSYDLKFDSENDRFQAFVRQDIVDQRSSLTLEVISGPSRGDRCSISSTNTSRLPMTLGRVSPSDLLVKDSEVSGKHALINWNLNKLKWELVDMGSLNGTLLNSQSVNHPDSGMRHWGDPIELASGDIITLGTTSKIRVQIASETKCQVPFGLGIASDPMALRRGGKKLPMEDVCYYHWPLPGTDQFGLFGICDGHGGAAAAKSASKILPEMVASILSDSLKREKVLSRQDASEILRDAVSRTEAFMNHHYEGCTATVLLVWADGHENFYAQCANVGDSACVMNVDGKQIKMTEDHRVTSYSERQRIKEIGEPLKDGETRLCGLNLARMLGDKYMKEQDSRFSSEPYISQVVHINQASGAFALLASDGFWDVISPKKAMQLVFQMKERCSPDRENSAEKVANFLLSEARTLRTKDNTSIIFLDFDTNSRKSSCKLDP* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0516 584 FunFam Protein phosphatase 2C 70 307 578 - -
Vvi5g0516 584 CDD FHA_PP2C70-like 177 286 - -
Vvi5g0516 584 CDD PP2Cc 311 571 IPR001932 -
Vvi5g0516 584 ProSitePatterns PPM-type phosphatase domain signature. 336 344 IPR000222 GO:0043169
Vvi5g0516 584 Pfam FHA domain 204 279 IPR000253 GO:0005515
Vvi5g0516 584 Pfam Protein phosphatase 2C 310 564 IPR001932 -
Vvi5g0516 584 SMART FHA_2 202 254 IPR000253 GO:0005515
Vvi5g0516 584 FunFam Protein phosphatase 2C 70 172 306 - -
Vvi5g0516 584 SUPERFAMILY SMAD/FHA domain 176 282 IPR008984 GO:0005515
Vvi5g0516 584 SUPERFAMILY PP2C-like 313 572 IPR036457 -
Vvi5g0516 584 PANTHER PROTEIN PHOSPHATASE 2C 295 567 IPR015655 GO:0004722|GO:0006470
Vvi5g0516 584 ProSiteProfiles PPM-type phosphatase domain profile. 299 571 IPR001932 -
Vvi5g0516 584 SMART PP2C_4 293 569 IPR001932 -
Vvi5g0516 584 Gene3D - 306 580 IPR036457 -
Vvi5g0516 584 Gene3D - 171 305 - -
Vvi5g0516 584 ProSiteProfiles Forkhead-associated (FHA) domain profile. 203 254 IPR000253 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0516 Vvi-Chr5 4673637 4694597 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0516 1 574 PP2C-type Phosphatase Gene Family AT5G19280 57.022 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0516 K01090 - vvi:100242550 1135.17