Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0509 ATGCTAGCTGCAAAGCCTATGGAACCTGAATTGGAGCAGAAGTCATGTACTGTTATGGCTCTTTTAGATGGAGGAATGCTGAAAAGACACAAAAGTTGGCTAAAGGCTGAGCCCCCAACAATAGTGGTTGCAACTGTGAGAAGTTTGTGCCAAATGCTGGAGAAGCAAATTTTCAAGCTAGAATCAATGAGGGTGCTGGTAATTGATGAGGTGGATTTCATGTTCAATGCTTCAAAACAAGTTGGTTCTCTTCGAAAGCTTTTAACATCATACTCTTCAACCAATAACCGTCAGACTGTTTTTGCCAGTGCATCCATCCCCCAGCACAGACGATTCCTACATGACTGTATACAGCAGAAATGGACTAAGAGTGATGTGGTTCATGTCCACGTGAATCCAATTGAGCCCATGCCATCATCTCTACACCATAGATTTGTGATATGTAATAAATATGAAAGGCGTCAAACTTTGCTATCCTTATTGCACTCTGATGCACCTGAGTGTGGCATAATTTTTGTTGGTGAACAGTCTGAGAAGTCAAAAAAAGCTGGAAATGCTCCATCAGCAACTCTTTTAATTGATTTCTTGAAGACTTCATATGGGGGTTGTCCAGATATTCTTCTTCTAGAGGAAGACATGAATTTCAATTTGCGTGCAGCTTCACTATCAGAAGTGAGACAAAGAGGAGGCTATCTTCTTATATCAACAGATATAGCAGCCAGAGGAGTCGACTTGCCTGAAACTACCCATATATACAACTTTGACCTCCCAAGAACTGTTGTAGATTATCTTCACCGAGCTGGACGAGCTGCTAGGAAACCATTCTCTGATCAGAAATGCTGTGTCACCAACATCATAACATCTGAGGAGCGGTTTGTTTTGCAGAGGTATGAAAATGAATTGATGTTTCACTGTGAAGAACTGTTCCTATCGACCCAGTGTTAA 945 0.4138 MLAAKPMEPELEQKSCTVMALLDGGMLKRHKSWLKAEPPTIVVATVRSLCQMLEKQIFKLESMRVLVIDEVDFMFNASKQVGSLRKLLTSYSSTNNRQTVFASASIPQHRRFLHDCIQQKWTKSDVVHVHVNPIEPMPSSLHHRFVICNKYERRQTLLSLLHSDAPECGIIFVGEQSEKSKKAGNAPSATLLIDFLKTSYGGCPDILLLEEDMNFNLRAASLSEVRQRGGYLLISTDIAARGVDLPETTHIYNFDLPRTVVDYLHRAGRAARKPFSDQKCCVTNIITSEERFVLQRYENELMFHCEELFLSTQC* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0509 314 CDD SF2_C_DEAD 141 272 - -
Vvi5g0509 314 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 14 301 - -
Vvi5g0509 314 Gene3D - 138 308 IPR027417 -
Vvi5g0509 314 Gene3D - 4 130 IPR027417 -
Vvi5g0509 314 Pfam DEAD/DEAH box helicase 17 108 IPR011545 GO:0003676|GO:0005524
Vvi5g0509 314 SMART helicmild6 190 274 IPR001650 -
Vvi5g0509 314 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 153 314 IPR001650 -
Vvi5g0509 314 Pfam Helicase conserved C-terminal domain 156 272 IPR001650 -
Vvi5g0509 314 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 20 297 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0509 Vvi-Chr5 4556047 4559414 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0509 24 299 Eukaryotic Initiation Factors Gene Family AT1G72730 24.399 1.90e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0509 - - vvi:100257883 632.484