Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0508 ATGGCGGACTTAACTTCTTCTGAAAATCCGATCTTCCTGTCGGAGTTCTCCGCCGGAGCTGCCGATGACGCTTCCGAGGATTCTTGTAGTATTTGTCTCGAGCCGTTCAGCACCGACGATCCTGCTACTATTACCAACTGCAGGCATGAATATCATCTTCAGTGTATTCTTGAATGGTCACAAAGAAGCAAAGAATGCCCAATTTGCTGGCAGTTTCTTGTCTTGCAAGACCCTACCAGCCAGGAGCTACTTGCTGCAGTGGAGGGTGAAAGGAGCCCAAGGTCAAGGAACTCATCCCCCACAGAATCCACATTTCTTCATCATTTCCAGGGAGATTTTGGTTATGATCATGATGCTTCTTACTCAGATGACTCCGATCTCGATGAGCATATTATGCAGCATGTAGTTGCTGCAGCAAGTGGAGCCCCTTATGTACACAGAAGGGAAAGGCAGAGATCTTCTGGTCTTGGTCCTTCTGAAAGTCTTGTTTTTCCTCCTACAGATGTGCCTGATGTGCAGACAATAAACACTCCGTCACCAGAAGAATATCAAAATTCAGGCAGTGTGTCATCTGAAAGCAATTCCCCAGCCCACAGCGATCAATCTGCTATCAATGCTCAACCTCTGTCATCAGGGGTTCCCTCTGTTGTGAATATGGTGTCTAGCACAGCTGCCAACAGAGATGGTCTAGCTAAACCCAGAGTTATTTTTGACCAGCCACTGCCTAGTAGTCCGAGGAGACCAAGCCCATCTGATTTGCTTTCTTTTTCTGACTCAATTAAATCTAGACTTTCGGCTGCTTCAGCAAGATACAAGGAATCAATCTCAAAAGGTACACGAGGTTTCAAGGAAAAACTACTTTCACGTAATAACTCAGTCAAGGAGCTGAGCAAAGGAGTTCAGCGTGAGATGAGTGCAGGTATTGCTAGTGTTACAAGGATGATTGAGCGCCTAGATCCTATCTTAAAACGCACTGGAGCATCTAATCCTGATTCCAGCTTTACTGGGGGAACCTCAAATGTCTCTCATAAGGGGAAGGGTGTGCAAGAAAATGTGATCACTCCTAGTGGAAATAATGGGGAAATCTCAAATGATTCGAGTCCTGATGCATCACCTCTTGCTTCGGTTACCATCTCAGACCGAGTTGAAGTTTTTCCTTTGCAGAGCGGACAATGA 1176 0.4583 MADLTSSENPIFLSEFSAGAADDASEDSCSICLEPFSTDDPATITNCRHEYHLQCILEWSQRSKECPICWQFLVLQDPTSQELLAAVEGERSPRSRNSSPTESTFLHHFQGDFGYDHDASYSDDSDLDEHIMQHVVAAASGAPYVHRRERQRSSGLGPSESLVFPPTDVPDVQTINTPSPEEYQNSGSVSSESNSPAHSDQSAINAQPLSSGVPSVVNMVSSTAANRDGLAKPRVIFDQPLPSSPRRPSPSDLLSFSDSIKSRLSAASARYKESISKGTRGFKEKLLSRNNSVKELSKGVQREMSAGIASVTRMIERLDPILKRTGASNPDSSFTGGTSNVSHKGKGVQENVITPSGNNGEISNDSSPDASPLASVTISDRVEVFPLQSGQ* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0508 391 Pfam Ring finger domain 27 69 IPR001841 -
Vvi5g0508 391 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 21 78 - -
Vvi5g0508 391 ProSiteProfiles Zinc finger RING-type profile. 29 69 IPR001841 -
Vvi5g0508 391 SMART ring_2 29 69 IPR001841 -
Vvi5g0508 391 MobiDBLite consensus disorder prediction 323 378 - -
Vvi5g0508 391 MobiDBLite consensus disorder prediction 143 212 - -
Vvi5g0508 391 FunFam E3 ubiquitin-protein ligase RHF1A 14 81 - -
Vvi5g0508 391 MobiDBLite consensus disorder prediction 231 254 - -
Vvi5g0508 391 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 73 IPR013083 -
Vvi5g0508 391 MobiDBLite consensus disorder prediction 170 212 - -
Vvi5g0508 391 MobiDBLite consensus disorder prediction 88 109 - -
Vvi5g0508 391 SUPERFAMILY RING/U-box 23 76 - -
Vvi5g0508 391 MobiDBLite consensus disorder prediction 326 374 - -
Vvi5g0508 391 MobiDBLite consensus disorder prediction 92 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0508 Vvi-Chr5 4550040 4553568 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0508 23 77 C3H Transcription Factor Family AT4G00335 47.273 2.95e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0508 K19043 - vvi:100240814 730.324