Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0501 ATGGATCAGCCAGGGCATGGGCAGCCCCCGGCAATGGGCATGGTTGGTAGTGCAGCTCAAATGCCATATGGTATCCCTCCATTTCAACCTAACCAAATGGTTGGGACCTCTGGACCTGGAACGGTTGGATCAATTCAATCTCCTACTCAGCCAGCAGGTATCTCTTCTCCAGCTCAGCTGGCACAACACCAACTTGCTTATCAGCACATTCACCAGCAGCAGCAACAGCAGCTGCAGCAACAACTCCAGAACTTTTGGCAAAATCAGTACCAAGAAATTGAGCAGACTACTGATTTTAAAAACCATAGTTTGCCATTGGCTAGGATCAAGAAGATTATGAAGGCAGATGAAGATGTAAGGATGATATCGGCAGAGGCCCCGGTCATCTTTGCCAGGGCATGTGAGATGTTCATTCTTGAGTTGACACTACGATCATGGAATCACACAGAGGAGAACAAAAGGAGGACACTTCAAAAGAATGACATTGCGGCTGCAATCACAAGGACTGATATATTTGATTTCTTAGTTGATATTGTCCCACGTGAGGATTTAAAAGATGAGGTACTAGCATCAATCCCAAGAGGGGGACCACTTCCAGTTGGAGGTCCTGCTGAGGGTCTCCCTTACTTTTATATGCAACCTCAGCATGGTCCACAGGTTGGAGCTCCAGGAATGGTTATGGGTAAGACTGTGATGGATCAAGGTCTTTATGGCCAACAGCCTCGCCCTTATGTTGCTCAGCAGATGTGGCCACAGCAGCAGCAACAGCAGCCACCTGCAGATTCTTGA 789 0.4778 MDQPGHGQPPAMGMVGSAAQMPYGIPPFQPNQMVGTSGPGTVGSIQSPTQPAGISSPAQLAQHQLAYQHIHQQQQQQLQQQLQNFWQNQYQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGGPLPVGGPAEGLPYFYMQPQHGPQVGAPGMVMGKTVMDQGLYGQQPRPYVAQQMWPQQQQQQPPADS* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0501 262 FunFam Nuclear transcription factor Y subunit gamma 68 181 - -
Vvi5g0501 262 SUPERFAMILY Histone-fold 72 175 IPR009072 GO:0046982
Vvi5g0501 262 Gene3D Histone, subunit A 65 181 IPR009072 GO:0046982
Vvi5g0501 262 Pfam Core histone H2A/H2B/H3/H4 62 166 IPR007125 GO:0003677
Vvi5g0501 262 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 64 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0501 Vvi-Chr5 4493642 4494430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0501 1 250 CCAAT-HAP5 Transcription Factor Family AT1G08970 62.550 7.28e-86 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vvi5g0501 CBFD_NFYB_HMF 5.9e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0501 K08066 - vvi:100266507 450.284