Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0497 ATGAAAAGTCTGTTTGAAAAGCAACTATCTCCCGGTACTTCCAACAATTCATCAAGTAGTGGGCAATCTAGAGATGATCAAGAGCTGGGCTCTCATGCAGTACCCAAGAATGGAGATCATGTTCGCAAGAAAAACTCATGGTTTTGCTGTTCTCCACCTGATCACATGGATCTGAACCCTGCTCGAATGATTTTAGCAGAGATGGTGGGGACTTTCATTCTGGTTTTCTGTGTATATGGGATTGAAGCAGTTACCCAGCTAATGAAAGGCGAAGTGGGTCTCTTGGAGTATGCAGTCACTGGAGGGTTGACAGTAGTAGTGTTGGTTTTCTCCATTGGGTCCATCTCCGGAGCACATGTAAACCCTTCTGTCACCATAACCTTTGCTACCCTTTGCCAATTCCCATGGTCCAAGGTTCCATACTACATATCGGCACAAATAGTAGGTTCGGTGCTGGCAACGTACGTGGGAAGGTCTATCTATGGCATAAAACCAGAACTTATCACTACCAAGCCGCTGCAAGGCTGCAGTTCTGCCTTCTGGGTCGAGTTCATCGCCACATTCATCATCATGTTCCTAGCTGTATCTTTGACAAGCCAACCTCAATCTGTAAGCCACTTGTCTGGTTTCGTCGTTGGAATAGCCATTGGACTTGCAGTGCTAATCACAGGGCCTGTTTCAGGAGGATCAATGAATCCAGCAAGGTCCTTGGGACCTGCAATTGTTTCGTGGAAATTTGACGACATATGGATTTATACAATCGCCCCAACTCTTGGAGCTGTGGCAGGAGGTCACCTGTTTCATCTGTTACGTCTCCGGCACCAGCCTTGCACCCCCAATTCCTCTCCCAACACCATTCTACTAAGCAACGCCTTCCAGTAG 882 0.4717 MKSLFEKQLSPGTSNNSSSSGQSRDDQELGSHAVPKNGDHVRKKNSWFCCSPPDHMDLNPARMILAEMVGTFILVFCVYGIEAVTQLMKGEVGLLEYAVTGGLTVVVLVFSIGSISGAHVNPSVTITFATLCQFPWSKVPYYISAQIVGSVLATYVGRSIYGIKPELITTKPLQGCSSAFWVEFIATFIIMFLAVSLTSQPQSVSHLSGFVVGIAIGLAVLITGPVSGGSMNPARSLGPAIVSWKFDDIWIYTIAPTLGAVAGGHLFHLLRLRHQPCTPNSSPNTILLSNAFQ* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0497 293 PRINTS Major intrinsic protein family signature 182 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi5g0497 293 PRINTS Major intrinsic protein family signature 101 125 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi5g0497 293 PRINTS Major intrinsic protein family signature 62 81 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi5g0497 293 PRINTS Major intrinsic protein family signature 250 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi5g0497 293 PRINTS Major intrinsic protein family signature 138 157 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi5g0497 293 PRINTS Major intrinsic protein family signature 213 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi5g0497 293 Gene3D Glycerol uptake facilitator protein. 28 282 IPR023271 -
Vvi5g0497 293 MobiDBLite consensus disorder prediction 1 38 - -
Vvi5g0497 293 MobiDBLite consensus disorder prediction 1 27 - -
Vvi5g0497 293 SUPERFAMILY Aquaporin-like 59 279 IPR023271 -
Vvi5g0497 293 PANTHER AQUAPORIN NIP2-1 39 276 IPR034294 -
Vvi5g0497 293 ProSitePatterns MIP family signature. 119 127 IPR022357 -
Vvi5g0497 293 Pfam Major intrinsic protein 61 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0497 Vvi-Chr5 4462134 4463397 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0497 18 291 Major Intrinsic Protein MIP AT5G37820 36.000 3.86e-56 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0497 K09874 - vvi:100246074 568.155